genome.fa.s6974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006974.1 Corchorus capsularis cultivar CVL-1 contig06995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17712

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093--1145	26	2.1	27	82	10	67	52	1	39	5	1.36
2906--2941	19	1.9	18	88	5	54	41	2	22	33	1.68
5865--5990	8	16.9	8	73	18	71	46	3	23	27	1.67
5903--5963	6	9.2	6	73	19	50	47	1	19	31	1.59
5873--5999	14	8.7	14	70	23	68	46	3	22	28	1.67
5874--5959	22	4.0	22	76	14	81	46	2	22	29	1.64
5903--5963	26	2.2	28	80	5	72	47	1	19	31	1.59
6129--6699	22	25.8	22	68	17	169	44	6	21	28	1.76
6091--6512	36	11.4	36	70	14	161	43	5	21	29	1.76
6077--6534	58	7.7	58	72	14	269	43	5	21	29	1.75
6464--6536	14	5.1	14	73	18	62	46	4	19	30	1.68
6605--6713	22	5.0	22	77	6	71	44	6	20	28	1.75
6694--6824	58	2.3	58	80	5	140	44	13	20	21	1.86
6809--6997	8	24.4	8	69	12	117	48	2	21	26	1.63
6809--6979	53	3.2	53	80	5	166	49	2	21	26	1.62
6834--6919	45	1.9	45	85	4	120	53	1	17	27	1.51
6813--6971	61	2.6	60	77	13	146	49	2	21	26	1.62
7937--7978	22	1.9	22	90	9	68	0	21	0	78	0.75
7934--7976	19	2.3	19	88	8	61	0	20	0	79	0.74
8269--8313	16	2.6	17	82	13	56	13	15	0	71	1.15
8743--8780	8	4.8	8	90	9	60	0	7	2	89	0.57
14707--14763	19	3.1	19	77	10	55	52	21	15	10	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17131--17260	33	3.9	33	88	2	154	8	26	41	23	1.83

Tables:   1

The End!