Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006978.1 Corchorus capsularis cultivar CVL-1 contig06999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20480

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
325--431
33
3.3
31
82
5
106
8
29
38
23
1.84
1166--1199
11
3.2
10
84
15
50
29
2
17
50
1.61
2617--2641
13
1.9
13
100
0
50
44
0
24
32
1.54
8580--8635
29
1.9
29
92
0
94
39
16
16
28
1.89
9936--9987
27
1.9
27
96
0
95
17
15
23
44
1.86
10081--10143
29
2.2
29
85
2
83
30
17
4
47
1.68
10437--10467
12
2.6
12
94
0
53
16
19
6
58
1.59
13703--13835
48
2.8
48
87
0
185
17
25
19
37
1.93
13800--14003
40
5.1
40
82
3
257
14
25
22
38
1.91
13800--14037
80
2.9
81
86
3
284
14
26
21
38
1.92
13825--14039
40
5.3
40
78
9
163
14
24
21
39
1.91
14052--14320
50
5.4
49
82
8
303
16
32
15
35
1.91
17067--17647
63
9.3
63
82
5
635
23
20
15
40
1.91
17046--18073
126
8.5
125
75
13
724
23
19
16
40
1.91
17193--18016
189
4.5
189
76
13
621
23
19
16
40
1.91
17657--18080
59
7.2
58
77
13
316
23
18
17
40
1.91
17891--17925
18
1.9
18
94
0
61
28
17
8
45
1.77
17800--18016
63
3.5
63
84
7
243
24
18
18
37
1.93
18371--18422
27
1.9
27
88
0
77
21
15
23
40
1.91

Tables:   1

The End!