Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006980.1 Corchorus capsularis cultivar CVL-1 contig07001, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:1152 original size:29 final size:29

Alignment explanation


    Indices: 1110--1167  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1100 TTTCCCTTTT

                                    *    
       1110 CATCCTCGGGCATATTGAAGGCGAGATTC
          1 CATCCTCGGGCATATTGAAGGCGACATTC

                                         
       1139 CATCCTCGGGCATATTGAAGGCGACATTC
          1 CATCCTCGGGCATATTGAAGGCGACATTC

       1168 TCCGCGAGGG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24


Consensus pattern (29 bp):   
CATCCTCGGGCATATTGAAGGCGACATTC
Done.