Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006981.1 Corchorus capsularis cultivar CVL-1 contig07002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54556

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1318--1530
78
2.9
74
90
6
310
38
13
0
48
1.46
2327--2601
109
2.5
109
93
4
455
48
1
11
38
1.50
4536--4573
20
1.9
20
88
0
58
15
36
21
26
1.93
5902--5959
28
2.1
28
90
0
89
6
25
20
46
1.75
14681--14729
25
2.0
25
88
4
73
32
30
0
36
1.58
17879--17979
51
2.0
51
96
0
184
20
13
15
49
1.79
22363--22388
8
3.2
8
100
0
52
38
38
11
11
1.78
22354--22388
16
2.2
16
89
0
52
40
40
11
8
1.72
26735--26772
6
6.3
6
100
0
76
0
31
18
50
1.47
31799--31835
17
2.2
17
90
9
58
24
0
56
18
1.41
36437--36881
245
1.8
245
97
0
836
22
16
20
40
1.91
40112--40173
29
2.1
29
93
0
106
38
6
22
32
1.80
44147--44213
32
2.1
32
94
0
116
34
11
16
37
1.85
44438--44464
14
1.9
14
100
0
54
44
7
3
44
1.49
53999--54084
43
2.0
43
100
0
172
32
32
13
20
1.92
54162--54195
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!