Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006986.1 Corchorus capsularis cultivar CVL-1 contig07007, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27808

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3049--3082
6
5.7
6
100
0
68
85
0
0
14
0.60
6326--6359
11
3.2
10
84
15
50
29
2
17
50
1.61
10547--10574
2
14.0
2
100
0
56
0
50
0
50
1.00
11975--12060
30
2.9
31
89
6
133
32
20
25
20
1.97
14871--14944
33
2.2
33
95
0
130
35
6
17
40
1.76
14871--14956
33
2.6
33
85
3
120
31
6
20
40
1.79
15331--15393
30
2.1
30
91
5
101
26
17
34
20
1.95
17951--18015
21
3.1
21
70
0
58
30
10
24
33
1.90
19442--19493
19
2.9
18
81
13
54
30
11
9
48
1.72
19481--19538
18
3.2
19
69
16
59
13
24
3
58
1.51
19514--19620
47
2.2
48
83
6
128
22
20
6
50
1.71
19617--19656
19
2.1
19
90
0
62
37
15
2
45
1.59
19720--19835
57
2.1
55
82
9
137
25
18
5
50
1.67
19813--19851
17
2.4
16
87
12
53
17
20
5
56
1.60
19828--19934
36
3.0
35
90
5
160
17
24
0
57
1.46
19874--19903
14
2.1
15
93
6
53
13
20
0
66
1.24
19932--20275
53
6.5
52
84
7
376
25
17
9
47
1.77
20382--20442
30
2.0
29
84
6
77
32
18
1
47
1.58
21031--21091
32
1.9
32
83
6
79
26
18
3
52
1.60
24560--24609
7
7.0
7
78
13
57
20
0
0
80
0.72
24559--24601
10
4.2
10
80
13
52
18
0
0
81
0.69
24558--24608
22
2.3
22
90
9
86
19
0
0
80
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24569--24606
19
2.0
20
94
5
69
21
0
0
78
0.74
26048--26155
33
3.3
33
83
6
130
8
26
41
23
1.82

Tables:   1

The End!