Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006989.1 Corchorus capsularis cultivar CVL-1 contig07010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51579
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:2089 original size:332 final size:327
Alignment explanation
Indices: 1357--2400 Score: 1005
Period size: 332 Copynumber: 3.2 Consensus size: 327
1347 AAAAAACCGT
* * * * * *
1357 GATTTCGACTAATATTTTGCAAAAGTTGACCAGAAATAGT-TTTCCTCATTTTTTTTGTCTAAAA
1 GATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAATA-TATTTCCTCA-ATTTTTAG-CCAAAA
* * * * * *
1421 TACTCATAATATATATATAATTGAACT-CAAAAAATATTAGAGGACTTTTCATGCTTTTAATATC
63 TACTCATTA-ATATATATAATTTAA-TGCAAAAAAGATTGGAGGACTTTTCACGCTTTTAATATT
* * * *
1485 GTTTTTGATA--TTTTCTTAATTAATTTCTAATTAATTCGAAACAAGATTCAGATGCTCGTAAAA
126 GTTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAA
* *
1548 ACAAATCTTTAAATGCAATGTGGCTGAAATTTGATTAGATGAATATATATATTTCAAGGAGTC-T
191 ACAAATC-TTAAAT-CAATGT-GCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTT
* * * * * * *
1612 CGACGCTAAAAATCATGCAAAACTAAGCCGAGG-CCTCGAAACGCGTTTTTAACAAAAAAAACCG
253 AG-CGC-AAAAATCATGCAAAACTGA-CCGGGGCCCTCGAAACACGTTTTTAGC--CAAAAACTG
* *
1676 TGATGGTTAGTACAC
313 TGATGATTATTACAC
* * * * *
1691 GATTTCGCCTAAAATTTTGCAAAAAAATGACCAGAAA-ATTTTTCCTCAATTTTTGGCTAAAATA
1 GATTTCGGCTAAAATTTTGC-AAAAATTGACCAGAAATATATTTCCTCAATTTTTAGCCAAAATA
* * * *
1755 CTCATGTAATATATATAATTTAATGCCAAAAAGATTGGAGGACTTTTTACGCTTTTCATATTATT
65 CTCAT-TAATATATATAATTTAATGCAAAAAAGATTGGAGGACTTTTCACGCTTTTAATATTGTT
*
1820 TTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAATAAGATTTAGATGCTCGTAAAAACA
129 TTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACA
* * * * *
1885 AATCCTTAAACTCAATGTGATTGGGATTTGATTAGATGAATATGGATATCTCAAGTAGTCTTAGC
194 AAT-CTTAAA-TCAATGTG-CTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTAGC
* * *
1950 GCAAAAAATCATGCAAAATTGACCCGGGGCCCTC-AAACACATTTTTAGCCAAAATCTGTGATGA
256 GC-AAAAATCATGCAAAACTGA-CCGGGGCCCTCGAAACACGTTTTTAGCCAAAAACTGTGATGA
2014 TTATTACAC
319 TTATTACAC
* *
2023 GATTTCGGCTAAAATTTTGCAAAAATTAACCAGAAATATATTTCCTCAATTTTTAGCCACAATAC
1 GATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAATATATTTCCTCAATTTTTAGCCAAAATAC
* * * * *
2088 TCATTAAAAATATATAATTT-ATCGCTAAAAAGATTGAAGGGCTTTTCACGCTTTTAATACTGTT
66 TCATT-AATATATATAATTTAAT-GCAAAAAAGATTGGAGGACTTTTCACGCTTTTAATATTGTT
* * * * *
2152 TTTCTTTTTTTTTTTCCGAATTAA-TT-T--GTAAA-CGAAACATGATTTAGATGCT--T----A
129 TTTC--ATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAA
* * * *
2206 -TAA----AAA-CAATG-GCTGAGATTTGGTTAGATGAATATAGATATTTGAAGGAGTCTCGATG
192 CAAATCTTAAATCAATGTGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCT-TA-G
* *** * * *
2264 C-CAAAAATCATTCAAAACTGAAATGGACCC-CGTAACACGTTTTCAGCCAAAAACTGTGATGAT
255 CGCAAAAATCATGCAAAACTGACCGGGGCCCTCGAAACACGTTTTTAGCCAAAAACTGTGATGAT
2327 TATTACAC
320 TATTACAC
* * *
2335 GATTTCGG-TAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCATAATAC
1 GATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAATATATTTCCTCAATTTTTAGCCAAAATAC
2399 TC
66 TC
2401 GTAAAAAAAA
Statistics
Matches: 605, Mismatches: 86, Indels: 61
0.80 0.11 0.08
Matches are distributed among these distances:
311 55 0.09
312 48 0.08
313 51 0.08
314 3 0.00
315 7 0.01
317 3 0.00
322 2 0.00
323 1 0.00
327 1 0.00
329 18 0.03
330 4 0.01
331 18 0.03
332 183 0.30
333 11 0.02
334 178 0.29
335 22 0.04
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (327 bp):
GATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAATATATTTCCTCAATTTTTAGCCAAAATAC
TCATTAATATATATAATTTAATGCAAAAAAGATTGGAGGACTTTTCACGCTTTTAATATTGTTTT
TCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAA
TCTTAAATCAATGTGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTAGCGCAAA
AATCATGCAAAACTGACCGGGGCCCTCGAAACACGTTTTTAGCCAAAAACTGTGATGATTATTAC
AC
Found at i:3784 original size:15 final size:16
Alignment explanation
Indices: 3766--3795 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3756 ATAAATAATA
3766 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
3781 ATATTATAATCTAAA
1 ATATTATAATCTAAA
3796 AATAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:7192 original size:18 final size:18
Alignment explanation
Indices: 7169--7212 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
7159 TGTATCAATT
7169 AACTAATAAACTAAACTA
1 AACTAATAAACTAAACTA
*
7187 AACTAACT-AATTAAACTA
1 AACTAA-TAAACTAAACTA
*
7205 AATTAATA
1 AACTAATA
7213 GGACAATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.27
Consensus pattern (18 bp):
AACTAATAAACTAAACTA
Found at i:7426 original size:18 final size:19
Alignment explanation
Indices: 7397--7434 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
7387 ACTTCACTCA
*
7397 CCCAATCAAATTCATTAAG
1 CCCAATCAAATTAATTAAG
7416 CCCAATC-AATTAATTAAG
1 CCCAATCAAATTAATTAAG
7434 C
1 C
7435 TATCACATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.26
Consensus pattern (19 bp):
CCCAATCAAATTAATTAAG
Found at i:8405 original size:1 final size:1
Alignment explanation
Indices: 8399--8431 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
8389 CATAAGTCAG
8399 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8432 AATTTTAAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:11727 original size:76 final size:75
Alignment explanation
Indices: 11589--11728 Score: 208
Period size: 76 Copynumber: 1.9 Consensus size: 75
11579 ATACTCTCTT
* * *
11589 GAAATTCTAAAATGACAAATATTTTAGACCAAAATTTCACTTCAAGATGAAAGATAAATTGGAAT
1 GAAATTCTAAAATGACAAATAGTTTAGACAAAAATTTCACTTCAAAATGAAAGATAAATTGGAAT
11654 AGACCAAGTA
66 AGACCAAGTA
* * * *
11664 GAAATTCTAAAATGACAACTAGTTTAGATTAAAAATTTCACTTTAAAATGATAGATAAATTGGAA
1 GAAATTCTAAAATGACAAATAGTTTAGA-CAAAAATTTCACTTCAAAATGAAAGATAAATTGGAA
11729 CGGAGGGAGT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
75 26 0.46
76 31 0.54
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (75 bp):
GAAATTCTAAAATGACAAATAGTTTAGACAAAAATTTCACTTCAAAATGAAAGATAAATTGGAAT
AGACCAAGTA
Found at i:12853 original size:29 final size:30
Alignment explanation
Indices: 12821--12900 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
12811 TTGCCTCATA
*
12821 AACTTCAAA-GCAGGACACTTTGCCCCCTG
1 AACTTCAAATGCAAGACACTTTGCCCCCTG
* *
12850 AACTTCCAAATTCAAGACATTTTGCCCCCTG
1 AACTT-CAAATGCAAGACACTTTGCCCCCTG
*
12881 AACTTCCTAAATTCAAGACA
1 AACTT-C-AAATGCAAGACA
12901 TTTTATCCTG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 5 0.11
30 4 0.09
31 24 0.53
32 12 0.27
ACGTcount: A:0.33, C:0.31, G:0.11, T:0.25
Consensus pattern (30 bp):
AACTTCAAATGCAAGACACTTTGCCCCCTG
Found at i:12875 original size:31 final size:32
Alignment explanation
Indices: 12834--12904 Score: 126
Period size: 31 Copynumber: 2.2 Consensus size: 32
12824 TTCAAAGCAG
*
12834 GACACTTTGCCCCCTGAACTTCC-AAATTCAA
1 GACATTTTGCCCCCTGAACTTCCTAAATTCAA
12865 GACATTTTGCCCCCTGAACTTCCTAAATTCAA
1 GACATTTTGCCCCCTGAACTTCCTAAATTCAA
12897 GACATTTT
1 GACATTTT
12905 ATCCTGATGG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 22 0.58
32 16 0.42
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (32 bp):
GACATTTTGCCCCCTGAACTTCCTAAATTCAA
Found at i:14771 original size:14 final size:14
Alignment explanation
Indices: 14754--14786 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14744 ACGAGAACTA
*
14754 GAGAGGGAGAAGGG
1 GAGAGGGAGAAAGG
14768 GAGAGGGAGAAAGG
1 GAGAGGGAGAAAGG
14782 GAGAG
1 GAGAG
14787 AGAGCGGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (14 bp):
GAGAGGGAGAAAGG
Found at i:19545 original size:88 final size:88
Alignment explanation
Indices: 19396--19571 Score: 325
Period size: 88 Copynumber: 2.0 Consensus size: 88
19386 GCCAAATCAT
*
19396 TGTCCTTAACCACCCTATTGTGGTTGGTATTCCTCTGAATAAATTGAAATCAAGGAAAAGAAAGT
1 TGTCCTTAACCACCCTATTGAGGTTGGTATTCCTCTGAATAAATTGAAATCAAGGAAAAGAAAGT
19461 CAGCGCCAAAAAAGAAACAAAGC
66 CAGCGCCAAAAAAGAAACAAAGC
* *
19484 TGTCCTTAACCACCTTATTGAGGTTGGTATTCCTCTGAATAAGTTGAAATCAAGGAAAAGAAAGT
1 TGTCCTTAACCACCCTATTGAGGTTGGTATTCCTCTGAATAAATTGAAATCAAGGAAAAGAAAGT
19549 CAGCGCCAAAAAAGAAACAAAGC
66 CAGCGCCAAAAAAGAAACAAAGC
19572 AGTTGAAAAT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (88 bp):
TGTCCTTAACCACCCTATTGAGGTTGGTATTCCTCTGAATAAATTGAAATCAAGGAAAAGAAAGT
CAGCGCCAAAAAAGAAACAAAGC
Found at i:20632 original size:42 final size:43
Alignment explanation
Indices: 20581--20674 Score: 138
Period size: 45 Copynumber: 2.2 Consensus size: 43
20571 AGTGCATTAC
20581 CTAA-ATTCTA-CTCAATCTCTAGATAATTCATCAAAATAAAG
1 CTAATATTCTACCTCAATCTCTAGATAATTCATCAAAATAAAG
*
20622 CTAATATTCTACTCCTCCATCTCTAGATAATTCATCAAAATAAAG
1 CTAATATTCTA--CCTCAATCTCTAGATAATTCATCAAAATAAAG
*
20667 TTAATATT
1 CTAATATT
20675 AATTGTTGCT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
41 4 0.09
42 6 0.13
45 37 0.79
ACGTcount: A:0.40, C:0.20, G:0.04, T:0.35
Consensus pattern (43 bp):
CTAATATTCTACCTCAATCTCTAGATAATTCATCAAAATAAAG
Found at i:31487 original size:2 final size:2
Alignment explanation
Indices: 31480--31513 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
31470 GATTCAATTG
31480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31514 TGCTTTTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31997 original size:19 final size:19
Alignment explanation
Indices: 31955--31997 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
31945 TATATCAATT
*
31955 CTTTTTACATGAACTGATT
1 CTTTTTACATGAACTGATG
*
31974 TTTTTTACATGAACTGATG
1 CTTTTTACATGAACTGATG
31993 CTTTT
1 CTTTT
31998 GCTTTTCCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.14, G:0.12, T:0.51
Consensus pattern (19 bp):
CTTTTTACATGAACTGATG
Found at i:32709 original size:32 final size:32
Alignment explanation
Indices: 32666--32726 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
32656 TCTAACTTCA
*
32666 ATTAATAGTGTTCCCATCATTTTAAATTCATG
1 ATTAATAGTGTTCCCACCATTTTAAATTCATG
* *
32698 ATTAATGGTGTTCCCACCTTTTTAAATTC
1 ATTAATAGTGTTCCCACCATTTTAAATTC
32727 CATATATGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (32 bp):
ATTAATAGTGTTCCCACCATTTTAAATTCATG
Found at i:41185 original size:19 final size:19
Alignment explanation
Indices: 41161--41207 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 19
41151 TTTGGTTGGT
41161 GGAAAA-CTACCCAGTCAAC
1 GGAAAACCT-CCCAGTCAAC
41180 GGAAAAAAACCTCCCAGTCAAC
1 GG---AAAACCTCCCAGTCAAC
41202 GGAAAA
1 GGAAAA
41208 TCACCCCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
19 6 0.25
22 16 0.67
23 2 0.08
ACGTcount: A:0.47, C:0.28, G:0.17, T:0.09
Consensus pattern (19 bp):
GGAAAACCTCCCAGTCAAC
Found at i:42868 original size:38 final size:37
Alignment explanation
Indices: 42773--42928 Score: 244
Period size: 37 Copynumber: 4.2 Consensus size: 37
42763 CTCTTTTTAG
* * * *
42773 ATTAAGTTC-TTTATTGACTCCACCTAATTACCCTGA
1 ATTAAGTCCTTTTATTGACGCTACTTAATTACCCTGA
42809 ATTAAG-CCTTTTATTGACGCTACTTAATTACCCTGA
1 ATTAAGTCCTTTTATTGACGCTACTTAATTACCCTGA
42845 ATTAAGTCCATTTTATTGACGCTACTTAATTACCCTGA
1 ATTAAGTCC-TTTTATTGACGCTACTTAATTACCCTGA
*
42883 ATTAAGTCCCTTTATTGACGCTACTTAATTACCCTGA
1 ATTAAGTCCTTTTATTGACGCTACTTAATTACCCTGA
42920 ATTAAGTCC
1 ATTAAGTCC
42929 CCAACTTGAC
Statistics
Matches: 112, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
35 1 0.01
36 36 0.32
37 38 0.34
38 37 0.33
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (37 bp):
ATTAAGTCCTTTTATTGACGCTACTTAATTACCCTGA
Found at i:42919 original size:75 final size:74
Alignment explanation
Indices: 42782--42928 Score: 249
Period size: 75 Copynumber: 2.0 Consensus size: 74
42772 GATTAAGTTC
* *
42782 TTTATTGACTCCACCTAATTACCCTGAATTAAGCCTTTTATTGACGCTACTTAATTACCCTGAAT
1 TTTATTGACGCCACCTAATTACCCTGAATTAAGCCCTTTATTGACGCTACTTAATTACCCTGAAT
42847 TAAGTCCAT
66 TAAGTCCAT
* *
42856 TTTATTGACGCTACTTAATTACCCTGAATTAAGTCCCTTTATTGACGCTACTTAATTACCCTGAA
1 TTTATTGACGCCACCTAATTACCCTGAATTAAG-CCCTTTATTGACGCTACTTAATTACCCTGAA
42921 TTAAGTCC
65 TTAAGTCC
42929 CCAACTTGAC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
74 30 0.44
75 38 0.56
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (74 bp):
TTTATTGACGCCACCTAATTACCCTGAATTAAGCCCTTTATTGACGCTACTTAATTACCCTGAAT
TAAGTCCAT
Found at i:42947 original size:18 final size:18
Alignment explanation
Indices: 42921--42985 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
42911 TTACCCTGAA
*
42921 TTAAGTCCCCAACTTGAC
1 TTAAGTCCCTAACTTGAC
* ** *
42939 TTAATTCCCTTCCTTGGAA
1 TTAAGTCCCTAACTT-GAC
*
42958 TCAAGTCCCTAACTTGAC
1 TTAAGTCCCTAACTTGAC
*
42976 TTAATTCCCT
1 TTAAGTCCCT
42986 TCCTTGGAAT
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
18 21 0.62
19 13 0.38
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (18 bp):
TTAAGTCCCTAACTTGAC
Found at i:42991 original size:18 final size:18
Alignment explanation
Indices: 42933--42991 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
42923 AAGTCCCCAA
42933 CTTGACTTAATTCCCTTC
1 CTTGACTTAATTCCCTTC
* * * **
42951 CTTGGAATCAAGTCCCTAA
1 CTT-GACTTAATTCCCTTC
42970 CTTGACTTAATTCCCTTC
1 CTTGACTTAATTCCCTTC
42988 CTTG
1 CTTG
42992 GAATCAAATC
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
18 17 0.57
19 13 0.43
ACGTcount: A:0.20, C:0.31, G:0.10, T:0.39
Consensus pattern (18 bp):
CTTGACTTAATTCCCTTC
Found at i:43060 original size:108 final size:110
Alignment explanation
Indices: 42937--43210 Score: 360
Period size: 108 Copynumber: 2.5 Consensus size: 110
42927 CCCCAACTTG
42937 ACTTAATTCCCTTCCTTGGAATCAAGTCCCT-AACT-TGACTTAATTCCCTTCCTTGGAATCAAA
1 ACTTAATTCCCTTCCTTGGAATCAAGT-CCTGAACTCT-ACTTAATTCCCTTCCTTGGAATCAAA
* * *
43000 TCCTTAACTCCACTTAATTCCCTTCCTTGGAATCAAGTCC-TTA-CT
64 CCCTTAACTCCACTTAATTCCCTTCCTTAGAATCAAGCCCTTTACCT
* * *
43045 ACTTAATTCCCTTCCTTGGAATCAAGTCCTGTACTCTACTTAATTCTCTTCCTTGGAATCAAGCC
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCTGAACTCTACTTAATTCCCTTCCTTGGAATCAAACC
* * *
43110 CTTTACTCTACTTAATTCTCTTCCTTAGAATCAAGCCCTTTACTCT
66 CTTAACTCCACTTAATTCCCTTCCTTAGAATCAAGCCCTTTAC-CT
** * *
43156 ACTTAATTCCCTTCCTTGGAATTTAGTTCTTAACTCTACTTAATAT-CCTTCCTTG
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCTGAACTCTACTTAAT-TCCCTTCCTTG
43211 AAATTAAGTT
Statistics
Matches: 145, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
107 3 0.02
108 88 0.61
109 4 0.03
111 49 0.34
112 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.08, T:0.39
Consensus pattern (110 bp):
ACTTAATTCCCTTCCTTGGAATCAAGTCCTGAACTCTACTTAATTCCCTTCCTTGGAATCAAACC
CTTAACTCCACTTAATTCCCTTCCTTAGAATCAAGCCCTTTACCT
Found at i:43223 original size:37 final size:37
Alignment explanation
Indices: 42937--43219 Score: 362
Period size: 37 Copynumber: 7.7 Consensus size: 37
42927 CCCCAACTTG
*
42937 ACTTAATTCCCTTCCTTGGAATCAAGTCCCTAACT-T
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCTTAACTCT
* *
42973 GACTTAATTCCCTTCCTTGGAATCAAATCCTTAACTCC
1 -ACTTAATTCCCTTCCTTGGAATCAAGTCCTTAACTCT
43011 ACTTAATTCCCTTCCTTGGAATCAAGTCCTT-A--CT
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCTTAACTCT
43045 ACTTAATTCCCTTCCTTGGAATCAAGTCCTGT-ACTCT
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCT-TAACTCT
* * *
43082 ACTTAATTCTCTTCCTTGGAATCAAGCCCTTTACTCT
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCTTAACTCT
* * * *
43119 ACTTAATTCTCTTCCTTAGAATCAAGCCCTTTACTCT
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCTTAACTCT
** *
43156 ACTTAATTCCCTTCCTTGGAATTTAGTTCTTAACTCT
1 ACTTAATTCCCTTCCTTGGAATCAAGTCCTTAACTCT
* *
43193 ACTTAATAT-CCTTCCTTGAAATTAAGT
1 ACTTAAT-TCCCTTCCTTGGAATCAAGT
43220 TCTTTGTCTG
Statistics
Matches: 223, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
34 31 0.14
35 2 0.01
36 2 0.01
37 187 0.84
38 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.39
Consensus pattern (37 bp):
ACTTAATTCCCTTCCTTGGAATCAAGTCCTTAACTCT
Found at i:43313 original size:35 final size:35
Alignment explanation
Indices: 43254--43381 Score: 165
Period size: 35 Copynumber: 3.7 Consensus size: 35
43244 TCTTTGGATC
* *
43254 AAGTCTTTGCTGACTTTACTTAATTCTTGTGAAATT
1 AAGTCCTTGCT-AATTTACTTAATTCTTGTGAAATT
*
43290 AGGTCCTTGCTAATTTACTTAATTCTTGTGAAATT
1 AAGTCCTTGCTAATTTACTTAATTCTTGTGAAATT
43325 AAGT-CTCTGCTAATTTTACTTAATTC---TGAAATT
1 AAGTCCT-TGCTAA-TTTACTTAATTCTTGTGAAATT
*
43358 AAGTCTTTGCTAATTTACTTAATT
1 AAGTCCTTGCTAATTTACTTAATT
43382 ACCCTGAATT
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
32 11 0.13
33 17 0.20
34 3 0.04
35 32 0.38
36 21 0.25
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.47
Consensus pattern (35 bp):
AAGTCCTTGCTAATTTACTTAATTCTTGTGAAATT
Found at i:43411 original size:68 final size:69
Alignment explanation
Indices: 43266--43402 Score: 163
Period size: 68 Copynumber: 2.0 Consensus size: 69
43256 GTCTTTGCTG
* **
43266 ACTTTACTTAATTCTTGTGAAATTAGGTCCTTGCTAATTTACTTAATTCTTGTGAAATTAAGTCT
1 ACTTTACTTAATTC-T-TGAAATTAAGTCCTTGCTAATTTACTTAATTCTCCTGAAATTAAGTCT
*
43331 CTGCTA
64 CTACTA
* * *
43337 ATTTTACTTAATTC-TGAAATTAAGTCTTTGCTAATTTACTTAATTAC-CCTG-AATTAAGTCTG
1 ACTTTACTTAATTCTTGAAATTAAGTCCTTGCTAATTTACTTAATT-CTCCTGAAATTAAGTCTC
43399 TACT
65 TACT
43403 TGCCTTTACC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
67 13 0.22
68 31 0.53
69 1 0.02
71 13 0.22
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.45
Consensus pattern (69 bp):
ACTTTACTTAATTCTTGAAATTAAGTCCTTGCTAATTTACTTAATTCTCCTGAAATTAAGTCTCT
ACTA
Found at i:43435 original size:41 final size:41
Alignment explanation
Indices: 43388--43571 Score: 254
Period size: 41 Copynumber: 4.6 Consensus size: 41
43378 AATTACCCTG
* *
43388 AATTAAGTCTGTACTTGCCTTTACCTAATTTCCTTCCTTGA
1 AATTAAGTCTGTGCTTGTCTTTACCTAATTTCCTTCCTTGA
*
43429 AATTAAGTATGTGCTTGTCTTTACCTAATTTCCTTCCTTGA
1 AATTAAGTCTGTGCTTGTCTTTACCTAATTTCCTTCCTTGA
* *
43470 AATTAAGTCTGTGCTT-TACTTTACTTAA-TTAC--CC-TG-
1 AATTAAGTCTGTGCTTGT-CTTTACCTAATTTCCTTCCTTGA
43506 AATTAAGTCTGTGCTTGTCTTTACCTAATTTCCTTCCTTGA
1 AATTAAGTCTGTGCTTGTCTTTACCTAATTTCCTTCCTTGA
* *
43547 AATTAGGTCTGTGCTTATCTTTACC
1 AATTAAGTCTGTGCTTGTCTTTACC
43572 CTTTAACTGC
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
36 25 0.20
37 6 0.05
38 2 0.02
39 2 0.02
40 6 0.05
41 85 0.67
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (41 bp):
AATTAAGTCTGTGCTTGTCTTTACCTAATTTCCTTCCTTGA
Found at i:43502 original size:118 final size:116
Alignment explanation
Indices: 43351--43571 Score: 361
Period size: 118 Copynumber: 1.9 Consensus size: 116
43341 TACTTAATTC
*
43351 TGAAATTAAGTCTTTGCTAATTTACTTAATTACCCTGAATTAAGTCTGTACTTGCCTTTACCTAA
1 TGAAATTAAGTCTGTGCTAATTTACTTAATTACCCTGAATTAAGTCTGTACTTGCCTTTACCTAA
*
43416 TTTCCTTCCTTGAAATTAAGTATGTGCTTGTCTTTACCTAATTTCCTTCCT
66 TTTCCTTCCTTGAAATTAAGTATGTGCTTATCTTTACCTAATTTCCTTCCT
* * *
43467 TGAAATTAAGTCTGTGCTTTACTTTACTTAATTACCCTGAATTAAGTCTGTGCTTGTCTTTACCT
1 TGAAATTAAGTCTGTGC--TAATTTACTTAATTACCCTGAATTAAGTCTGTACTTGCCTTTACCT
* *
43532 AATTTCCTTCCTTGAAATTAGGTCTGTGCTTATCTTTACC
64 AATTTCCTTCCTTGAAATTAAGTATGTGCTTATCTTTACC
43572 CTTTAACTGC
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
116 16 0.17
118 80 0.83
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (116 bp):
TGAAATTAAGTCTGTGCTAATTTACTTAATTACCCTGAATTAAGTCTGTACTTGCCTTTACCTAA
TTTCCTTCCTTGAAATTAAGTATGTGCTTATCTTTACCTAATTTCCTTCCT
Found at i:43626 original size:37 final size:36
Alignment explanation
Indices: 43574--43800 Score: 269
Period size: 37 Copynumber: 6.2 Consensus size: 36
43564 TCTTTACCCT
43574 TTAACTGCTTTTACTTAATTACCCTGAA-TATAGTCC
1 TTAACTGCTTTTACTTAATTACCCTGAATTA-AGTCC
* **
43610 TTCAACTGCTTTTACTTAATTATCCTGAATTAAGTTA
1 TT-AACTGCTTTTACTTAATTACCCTGAATTAAGTCC
*
43647 TTAACTGCTTTTACTTAATTGCCCTGAATTAAG-CTC
1 TTAACTGCTTTTACTTAATTACCCTGAATTAAGTC-C
*
43683 TTAACCTGCTTTTACTTAATTACCCCTGAATTAAGTTCT
1 TTAA-CTGCTTTTACTTAATTA-CCCTGAATTAAG-TCC
* * *
43722 TTACCTGCTTTTACTTAATTGCCCTGAATTAAGTTC
1 TTAACTGCTTTTACTTAATTACCCTGAATTAAGTCC
* * * *
43758 TTAACCTGCTTTTACTTAATTGCTCTGATTTAAGTTC
1 TTAA-CTGCTTTTACTTAATTACCCTGAATTAAGTCC
43795 TTAACT
1 TTAACT
43801 ATGTTTCCCT
Statistics
Matches: 167, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
36 41 0.25
37 92 0.55
38 30 0.18
39 3 0.02
40 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (36 bp):
TTAACTGCTTTTACTTAATTACCCTGAATTAAGTCC
Found at i:43748 original size:75 final size:73
Alignment explanation
Indices: 43572--43800 Score: 313
Period size: 75 Copynumber: 3.1 Consensus size: 73
43562 TATCTTTACC
* *
43572 CTTTAACTGCTTTTACTTAATTACCCTGAA-TATAGTCCTTCAA-CTGCTTTTACTTAATTATCC
1 CTTTAACTGCTTTTACTTAATTGCCCTGAATTA-AGT-CTT-AACCTGCTTTTACTTAATTACCC
43635 TGAATTAAGTT
63 TGAATTAAGTT
*
43646 -ATTAACTGCTTTTACTTAATTGCCCTGAATTAAGCTCTTAACCTGCTTTTACTTAATTACCCCT
1 CTTTAACTGCTTTTACTTAATTGCCCTGAATTAAG-TCTTAACCTGCTTTTACTTAATTA-CCCT
43710 GAATTAAGTT
64 GAATTAAGTT
* * *
43720 CTTTACCTGCTTTTACTTAATTGCCCTGAATTAAGTTCTTAACCTGCTTTTACTTAATTGCTCTG
1 CTTTAACTGCTTTTACTTAATTGCCCTGAATTAAG-TCTTAACCTGCTTTTACTTAATTACCCTG
*
43785 ATTTAAGTT
65 AATTAAGTT
43794 C-TTAACT
1 CTTTAACT
43801 ATGTTTCCCT
Statistics
Matches: 140, Mismatches: 10, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
72 2 0.01
73 54 0.39
74 29 0.21
75 55 0.39
ACGTcount: A:0.25, C:0.21, G:0.09, T:0.45
Consensus pattern (73 bp):
CTTTAACTGCTTTTACTTAATTGCCCTGAATTAAGTCTTAACCTGCTTTTACTTAATTACCCTGA
ATTAAGTT
Found at i:43841 original size:41 final size:41
Alignment explanation
Indices: 43794--44239 Score: 581
Period size: 41 Copynumber: 10.9 Consensus size: 41
43784 GATTTAAGTT
** **
43794 CTTAACTATGTTTCCCTTTCTTAATTACCCTGGATTAAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATT-AAAAC
** * **
43836 C-TAACTATGCCTGACTTTCTTAATCACCCCAGATT-AAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
* *
43875 TTTAACTATGTTTGACTTTCTTCATCGCCCTGGATTAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
* *
43916 TTTAACTATGTTGGACTTTCTTAATCGCCCTGGATTAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
* * *
43957 CTTGACTATCTTTGACTTTCTTAATCGCCATGGATTAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
*
43998 CTTAACTATGTTGGACTTTCTTAATCGCCCTGGATTAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
* * *
44039 CTTGACTATCTTTGACTTTCTTAATCGCCCTAGATTAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
*
44080 CTTAACTATGTTGGACTTTCTTAATCGCCCTGGATTAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
* * * * *
44121 CTTGACTATCTTTGACCTTCTTAATCGCCTTGGATTAAAAT
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
* * *
44162 TTTAACCATGTTTGACTTTCTTAATCACCCTGGATTAAAAC
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
* * *
44203 TTTATCTATGTTTGACTTTCTTAATCGTCCTGGATTA
1 CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTA
44240 GAACTTTACT
Statistics
Matches: 351, Mismatches: 51, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
39 4 0.01
40 28 0.08
41 318 0.91
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.39
Consensus pattern (41 bp):
CTTAACTATGTTTGACTTTCTTAATCGCCCTGGATTAAAAC
Found at i:44346 original size:71 final size:71
Alignment explanation
Indices: 44271--44540 Score: 443
Period size: 71 Copynumber: 3.8 Consensus size: 71
44261 TCTAAATTAT
* * * * * **
44271 GACCTTGACTATACTTTCTTTTCTTAATTAGCTTGAATTAAGACTTTACTCTTCCTT-GCTGCCC
1 GACCTTGACTGTACTTTCCTTTCTTAATTACCCTGAATTAAGACTTTACT-TTTCTTAATTGCCC
44335 AACTTAG
65 AACTTAG
* *
44342 GACCTTGACTGCACTTTCTTTTCTTAATTACCCTGAATTAAGACTTTACTTTTCTTAATTGCCCA
1 GACCTTGACTGTACTTTCCTTTCTTAATTACCCTGAATTAAGACTTTACTTTTCTTAATTGCCCA
44407 ACTTAG
66 ACTTAG
44413 GACCTTGACTGTACTTTCCTTTCTTAATTACCCTGAATTAAGACTTTACTTTTCTTAATTGCCCA
1 GACCTTGACTGTACTTTCCTTTCTTAATTACCCTGAATTAAGACTTTACTTTTCTTAATTGCCCA
44478 ACTTAG
66 ACTTAG
44484 GACCTTGACTGTACTTTCCTTTCTTAATTACCCTGAATTAAGACTTTACTTTTCTTA
1 GACCTTGACTGTACTTTCCTTTCTTAATTACCCTGAATTAAGACTTTACTTTTCTTA
44541 GCTTCCCTTA
Statistics
Matches: 189, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
70 5 0.03
71 184 0.97
ACGTcount: A:0.23, C:0.24, G:0.10, T:0.43
Consensus pattern (71 bp):
GACCTTGACTGTACTTTCCTTTCTTAATTACCCTGAATTAAGACTTTACTTTTCTTAATTGCCCA
ACTTAG
Found at i:44394 original size:31 final size:31
Alignment explanation
Indices: 44354--44540 Score: 105
Period size: 31 Copynumber: 5.5 Consensus size: 31
44344 CCTTGACTGC
44354 ACTTT-CTTTTCTTAATTACCCTGAATTAAG
1 ACTTTACTTTTCTTAATTACCCTGAATTAAG
*
44384 ACTTTACTTTTCTTAATTGCCC--AACTTAGGACCTTG
1 ACTTTACTTTTCTTAATTACCCTGAA-TTA--A----G
*
44420 ACTGTACTTTCCTTTCTTAATTACCCTGAATTAAG
1 ACTTTAC--T--TTTCTTAATTACCCTGAATTAAG
*
44455 ACTTTACTTTTCTTAATTGCCC--AACTTAGGACCTTG
1 ACTTTACTTTTCTTAATTACCCTGAA-TTA--A----G
*
44491 ACTGTACTTTCCTTTCTTAATTACCCTGAATTAAG
1 ACTTTAC--T--TTTCTTAATTACCCTGAATTAAG
44526 ACTTTACTTTTCTTA
1 ACTTTACTTTTCTTA
44541 GCTTCCCTTA
Statistics
Matches: 122, Mismatches: 8, Indels: 53
0.67 0.04 0.29
Matches are distributed among these distances:
29 4 0.03
30 11 0.09
31 35 0.29
32 2 0.02
33 2 0.02
35 14 0.11
36 14 0.11
38 2 0.02
39 2 0.02
40 26 0.21
41 6 0.05
42 4 0.03
ACGTcount: A:0.24, C:0.23, G:0.09, T:0.44
Consensus pattern (31 bp):
ACTTTACTTTTCTTAATTACCCTGAATTAAG
Found at i:44428 original size:36 final size:36
Alignment explanation
Indices: 44383--44500 Score: 106
Period size: 36 Copynumber: 3.3 Consensus size: 36
44373 CCTGAATTAA
*
44383 GACTTTACTTTTCTTAATTGCCCAACTTAGGACCTT
1 GACTGTACTTTTCTTAATTGCCCAACTTAGGACCTT
*
44419 GACTGTACTTTCCTTTCTTAATTACCCTGAA-TTA--A----
1 GACTGTAC--T--TTTCTTAATTGCCC--AACTTAGGACCTT
*
44454 GACTTTACTTTTCTTAATTGCCCAACTTAGGACCTT
1 GACTGTACTTTTCTTAATTGCCCAACTTAGGACCTT
44490 GACTGTACTTT
1 GACTGTACTTT
44501 CCTTTCTTAA
Statistics
Matches: 64, Mismatches: 5, Indels: 26
0.67 0.05 0.27
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 13 0.20
32 1 0.02
33 1 0.02
35 7 0.11
36 17 0.27
38 1 0.02
39 1 0.02
40 13 0.20
41 3 0.05
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.11, T:0.42
Consensus pattern (36 bp):
GACTGTACTTTTCTTAATTGCCCAACTTAGGACCTT
Found at i:44439 original size:40 final size:40
Alignment explanation
Indices: 44392--44512 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
44382 AGACTTTACT
44392 TTTCTTAATTGCCCAACTTAGGACCTTGACTGTACTTTCC
1 TTTCTTAATTGCCCAACTTAGGACCTTGACTGTACTTTCC
* *
44432 TTTCTTAATTACCCTGAA-TTA--A----GACTTTAC--T--
1 TTTCTTAATTGCCC--AACTTAGGACCTTGACTGTACTTTCC
44463 TTTCTTAATTGCCCAACTTAGGACCTTGACTGTACTTTCC
1 TTTCTTAATTGCCCAACTTAGGACCTTGACTGTACTTTCC
44503 TTTCTTAATT
1 TTTCTTAATT
44513 ACCCTGAATT
Statistics
Matches: 64, Mismatches: 4, Indels: 26
0.68 0.04 0.28
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 13 0.20
32 1 0.02
33 1 0.02
35 7 0.11
36 7 0.11
38 1 0.02
39 1 0.02
40 23 0.36
41 3 0.05
42 2 0.03
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (40 bp):
TTTCTTAATTGCCCAACTTAGGACCTTGACTGTACTTTCC
Found at i:50889 original size:34 final size:34
Alignment explanation
Indices: 50846--50913 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
50836 TGTACTCCAC
50846 TTCATCAATAAAATTATTTATTTGTTCCAAATTT
1 TTCATCAATAAAATTATTTATTTGTTCCAAATTT
50880 TTCATCAATAAAATTATTTATTTGTTCCAAATTT
1 TTCATCAATAAAATTATTTATTTGTTCCAAATTT
50914 CTTACTCCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50
Consensus pattern (34 bp):
TTCATCAATAAAATTATTTATTTGTTCCAAATTT
Found at i:51189 original size:21 final size:21
Alignment explanation
Indices: 51165--51225 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
51155 GCAAATAGTA
51165 TTTTAAAATAAGAAAGGCTTT
1 TTTTAAAATAAGAAAGGCTTT
51186 TTTTAAAATAAGAAA--C---
1 TTTTAAAATAAGAAAGGCTTT
51202 -TTTAAAATAAGAAAGGCTTT
1 TTTTAAAATAAGAAAGGCTTT
51222 TTTT
1 TTTT
51226 TATTTTAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
15 14 0.41
17 1 0.03
19 1 0.03
21 18 0.53
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.39
Consensus pattern (21 bp):
TTTTAAAATAAGAAAGGCTTT
Found at i:51207 original size:15 final size:15
Alignment explanation
Indices: 51187--51215 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51177 AAAGGCTTTT
51187 TTTAAAATAAGAAAC
1 TTTAAAATAAGAAAC
51202 TTTAAAATAAGAAA
1 TTTAAAATAAGAAA
51216 GGCTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (15 bp):
TTTAAAATAAGAAAC
Done.