Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000699.1 Corchorus capsularis cultivar CVL-1 contig00699, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1060
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39


Found at i:46 original size:23 final size:23

Alignment explanation


    Indices: 7--51  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 23

          1 CTCTGT

                       *     *     
          7 TTAGAGTTTATTCAATTTAGTCA
          1 TTAGAGTTTATGCAATTAAGTCA

                                   
         30 TTAGA-TTTATGCTAATTAAGTC
          1 TTAGAGTTTATGC-AATTAAGTC

         52 CAAGAGGTCA


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  22    6  0.32
  23   13  0.68

ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47


Consensus pattern (23 bp):   
TTAGAGTTTATGCAATTAAGTCA
Done.