genome.fa.s6990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006990.1 Corchorus capsularis cultivar CVL-1 contig07011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144852

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261--286	7	3.7	7	100	0	52	15	42	0	42	1.47
656--684	2	15.0	2	92	7	51	51	0	0	48	1.00
8451--8488	17	2.2	17	100	0	76	28	18	13	39	1.88
14856--14907	26	2.0	26	84	3	68	61	7	1	28	1.34
15483--15517	3	11.7	3	100	0	70	31	0	0	68	0.90
15481--15545	12	5.3	12	77	15	62	27	0	0	72	0.85
15672--15718	20	2.3	20	100	0	94	8	40	34	17	1.79
21756--21815	27	2.3	27	85	2	77	61	6	1	30	1.31
24055--24105	27	1.9	27	84	4	68	58	11	7	21	1.58
24696--24737	17	2.7	15	86	13	66	33	9	9	47	1.68
25126--25209	33	2.5	33	88	3	116	13	33	42	10	1.78
25126--25219	33	2.8	33	85	6	102	15	34	39	10	1.83
29598--29673	22	3.4	22	68	22	68	9	18	13	59	1.60
29698--29743	23	2.0	23	87	8	67	17	8	23	50	1.74
30665--30713	3	16.7	3	79	12	57	69	0	30	0	0.89
31309--31402	44	2.1	45	96	2	172	30	12	9	46	1.74
33637--34013	51	7.4	51	78	9	344	41	3	14	40	1.62
33957--33996	21	2.0	21	90	5	64	52	5	7	35	1.51
33637--34026	101	3.8	102	79	8	246	41	3	14	40	1.62
34525--34579	25	2.2	25	93	0	92	43	10	12	32	1.78
34497--35045	35	16.1	35	81	8	582	38	10	18	32	1.84
37195--37458	131	2.0	131	88	2	397	37	9	3	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38718--38890	93	1.9	93	88	2	267	32	13	2	52	1.53
38727--38914	93	2.0	93	83	2	234	34	13	2	50	1.54
41794--41822	14	2.1	14	100	0	58	41	6	0	51	1.28
43295--43455	79	2.0	79	92	0	268	50	30	9	8	1.66
49840--49986	79	1.9	76	83	5	188	27	4	12	54	1.58
54261--54362	31	3.3	31	84	0	123	18	21	26	33	1.96
54316--54412	51	1.9	51	86	0	140	16	18	28	36	1.93
57313--57350	11	3.5	11	89	10	51	39	0	2	57	1.12
63318--63352	17	2.1	16	89	5	52	37	0	0	62	0.95
64791--64831	15	2.9	15	82	7	50	24	4	0	70	1.06
65490--65556	23	3.0	23	79	14	70	5	25	0	68	1.12
66485--66518	2	17.0	2	100	0	68	50	0	0	50	1.00
68356--68380	2	12.5	2	100	0	50	52	0	0	48	1.00
69567--69606	3	13.3	3	94	0	71	30	0	2	67	1.04
69608--69633	3	8.7	3	100	0	52	34	30	0	34	1.58
69714--69872	80	2.0	80	92	1	266	30	18	7	42	1.78
77931--77996	30	2.2	31	86	5	100	54	16	13	15	1.71
80252--80285	1	34.0	1	87	0	50	94	0	5	0	0.32
82557--82613	27	2.1	27	100	0	114	36	8	17	36	1.81
85734--85846	56	2.0	56	91	0	181	30	15	20	33	1.94
86311--86350	21	1.9	21	85	10	55	22	40	7	30	1.81
90645--90704	29	2.0	31	84	12	81	58	1	0	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90635--90706	31	2.4	31	79	11	87	59	1	0	38	1.06
93722--93770	20	2.3	21	82	10	64	55	8	0	36	1.30
93725--93772	15	3.2	15	85	8	62	56	6	0	37	1.25
94286--94407	60	2.0	60	96	0	226	20	11	14	53	1.72
94437--94555	60	2.0	60	98	0	229	38	15	10	35	1.82
95148--95221	31	2.4	31	86	0	103	36	17	16	29	1.92
95381--95453	30	2.4	30	84	4	85	34	9	16	39	1.81
96295--96326	2	16.0	2	100	0	64	50	0	0	50	1.00
97606--97643	20	1.9	20	89	10	60	10	28	2	57	1.45
103066--103096	2	15.5	2	100	0	62	48	0	0	51	1.00
103841--103865	13	1.9	13	100	0	50	56	0	0	44	0.99
104397--104432	17	2.1	17	89	0	54	66	0	2	30	1.06
111852--112019	93	1.8	92	92	1	282	34	13	0	51	1.45
113601--113663	31	2.0	31	84	6	83	28	17	6	47	1.72
123469--123502	11	3.2	10	84	15	50	50	17	2	29	1.61
124286--124435	75	2.0	75	98	0	291	44	13	14	28	1.82
125253--125281	2	15.0	2	92	7	51	51	0	0	48	1.00
125299--125797	167	3.0	163	82	5	588	30	15	15	39	1.88
125958--125991	17	2.0	17	100	0	68	41	0	5	52	1.25
128544--128616	36	2.0	36	94	0	128	41	17	9	31	1.82
130164--130209	24	1.9	24	95	0	83	19	28	8	43	1.80
131722--131933	106	2.0	106	100	0	424	51	19	11	16	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133060--133242	76	2.4	76	92	0	303	45	19	12	22	1.83
138443--138481	6	6.5	6	82	11	53	82	15	2	0	0.79
138446--138483	19	2.0	19	94	0	67	81	13	5	0	0.85
139056--139091	13	2.8	13	95	0	63	11	16	16	55	1.68
143486--143780	109	2.7	109	92	4	466	49	1	11	37	1.48

Tables:   1

The End!