genome.fa.s6994.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006994.1 Corchorus capsularis cultivar CVL-1 contig07015, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17784

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264--414	41	3.7	41	83	5	180	35	15	13	35	1.87
264--414	81	1.9	82	82	1	196	35	15	13	35	1.87
9694--9736	19	2.1	21	84	16	56	27	6	2	62	1.33
10130--10218	22	4.1	22	73	11	76	37	10	16	35	1.83
10179--10227	22	2.2	22	89	7	73	32	12	20	34	1.90
10234--10282	22	2.2	22	85	0	62	26	6	24	42	1.78
10384--10449	22	3.0	22	77	2	62	37	4	19	37	1.73
10392--10696	22	13.9	22	68	14	67	40	9	16	34	1.80
10472--10698	22	10.5	22	71	14	141	42	9	14	33	1.78
10486--10700	109	2.0	108	79	14	237	42	9	14	33	1.78
10804--10851	19	2.5	19	89	3	69	47	10	16	25	1.78
10842--11338	22	22.7	22	69	13	152	39	10	14	35	1.80
10967--11072	23	4.6	23	83	3	115	37	9	14	38	1.78
10967--11072	46	2.3	46	85	6	135	37	9	14	38	1.78
10804--11072	22	12.5	22	74	14	131	42	9	15	33	1.79
11860--12006	70	2.1	69	92	2	242	38	9	2	49	1.50
12249--12466	22	9.7	22	73	10	154	32	15	15	37	1.89
12339--12441	21	4.8	21	78	3	89	34	14	15	34	1.88
12267--12441	43	3.9	43	75	9	143	33	14	16	36	1.89
13330--13536	35	5.8	34	76	9	182	16	25	3	54	1.59
13396--13744	21	17.4	20	68	21	121	17	21	5	56	1.61
13510--13751	21	11.3	21	76	8	213	17	20	6	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13441--13548	35	3.1	33	74	12	92	16	19	5	58	1.58
13510--13744	42	5.5	42	81	7	235	17	20	6	55	1.63
13609--13686	14	5.7	13	70	10	57	17	20	2	58	1.50
13661--13797	64	2.1	64	82	7	163	21	19	5	53	1.64
13512--13793	149	1.9	148	81	5	336	18	20	5	54	1.64
13995--14059	26	2.5	26	87	2	85	23	21	6	49	1.72
14024--14292	55	4.9	55	92	0	430	24	19	7	48	1.75
14168--14250	21	4.3	21	63	27	58	25	21	8	44	1.80
17682--17730	26	2.0	24	84	15	64	51	12	12	24	1.73

Tables:   1

The End!