Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006995.1 Corchorus capsularis cultivar CVL-1 contig07016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50235

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5281--5321
13
3.2
13
89
3
57
17
9
12
60
1.57
5805--5926
59
2.1
59
100
0
244
23
18
18
39
1.92
7197--7275
36
2.2
36
88
4
115
34
30
17
17
1.94
7083--7357
107
2.6
107
82
6
342
36
27
17
18
1.94
7266--7365
35
2.8
35
79
7
112
37
26
19
18
1.94
7386--7477
35
2.7
35
84
1
114
40
15
21
22
1.91
7568--7654
35
2.5
35
88
1
131
31
19
24
25
1.98
8602--8631
14
2.1
14
93
0
51
0
16
0
83
0.65
12048--12111
23
2.8
23
81
9
69
43
3
26
26
1.69
13954--14210
35
7.7
35
82
11
313
32
17
9
40
1.82
14028--14210
69
2.6
70
94
0
323
31
16
9
42
1.81
14728--14795
33
2.1
33
83
5
84
45
10
2
41
1.53
14713--14833
53
2.3
53
77
7
120
39
14
4
40
1.68
14960--15020
31
2.0
31
83
6
79
37
18
13
31
1.88
16692--16825
59
2.3
59
94
2
225
22
17
20
39
1.92
19426--19859
157
2.8
157
93
1
719
30
19
16
32
1.94
20742--20775
11
3.2
10
84
15
50
29
2
17
50
1.61
27695--28117
156
2.7
155
87
3
613
31
19
16
32
1.94
40700--40730
13
2.5
13
94
5
55
35
16
22
25
1.94
42236--42277
13
3.2
13
78
15
50
64
0
2
33
1.07
43400--43442
21
2.0
22
86
13
63
34
13
9
41
1.77
44153--44237
29
2.9
29
82
8
109
20
31
15
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45574--45610
17
2.2
17
95
0
65
37
27
5
29
1.79

Tables:   1

The End!