Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006998.1 Corchorus capsularis cultivar CVL-1 contig07019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50024

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
560--595
10
3.5
10
88
3
54
41
2
0
55
1.14
792--916
44
2.8
45
84
9
152
29
13
24
32
1.94
841--928
44
2.0
42
93
4
149
27
11
29
31
1.91
3462--3532
34
2.1
34
89
5
108
36
23
9
29
1.87
3470--3532
17
3.6
17
89
2
90
36
25
7
30
1.84
7984--8016
2
16.5
2
100
0
66
51
0
0
48
1.00
19483--19540
30
1.9
30
96
0
107
13
32
3
50
1.59
21938--22019
30
2.8
30
76
7
87
43
3
18
34
1.67
30000--30040
2
21.5
2
90
9
68
48
0
0
51
1.00
31549--31717
31
5.4
31
85
5
198
18
22
24
34
1.96
34458--34488
15
2.1
15
93
0
53
38
16
0
45
1.47
34705--34798
38
2.5
36
81
11
118
14
19
11
54
1.71
36645--36794
44
3.4
43
79
7
149
38
12
13
36
1.82
36645--36815
22
7.7
21
73
9
117
37
11
14
36
1.82
36641--36829
66
2.8
68
78
7
181
35
10
14
38
1.81
36784--36843
23
2.6
23
78
2
66
35
6
16
41
1.75
36886--37283
22
17.9
22
70
11
159
39
9
16
34
1.81
36886--37651
44
17.8
43
65
17
130
38
9
16
35
1.81
37362--37651
22
13.5
21
69
15
105
39
8
16
34
1.80
37528--37604
23
3.4
23
78
8
77
42
5
14
37
1.68
37618--37664
22
2.1
22
88
0
67
34
8
14
42
1.77
37717--37828
22
5.0
22
73
10
93
33
13
17
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40326--40369
21
2.1
21
100
0
88
45
0
13
40
1.44
40428--40481
15
3.6
15
80
9
58
61
0
3
35
1.14
47044--47268
108
2.1
110
89
3
348
44
14
9
32
1.78
47335--47521
91
2.1
91
97
0
356
35
17
12
34
1.88

Tables:   1

The End!