Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006999.1 Corchorus capsularis cultivar CVL-1 contig07020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33796

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1501--1530
2
15.0
2
100
0
60
50
0
0
50
1.00
1716--1797
32
2.6
32
90
7
123
34
21
20
23
1.97
2095--2160
31
2.0
34
88
8
102
34
6
21
37
1.78
6882--7124
131
1.9
131
93
1
425
26
11
21
39
1.88
7845--7885
21
2.0
21
85
9
57
9
17
2
70
1.25
19718--19774
7
8.3
7
88
1
80
61
0
36
1
1.07
19786--19840
12
4.4
13
75
6
51
78
5
10
5
1.08
19786--19840
18
2.9
18
78
5
56
78
5
10
5
1.08
24681--24774
42
2.2
42
81
7
102
19
46
24
9
1.79
33738--33767
15
2.0
15
100
0
60
53
6
6
33
1.53
33757--33796
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!