genome.fa.s7000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007000.1 Corchorus capsularis cultivar CVL-1 contig07021, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88177

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3693--3842	75	2.0	74	93	1	255	43	24	12	19	1.86
8458--8494	13	2.8	13	91	0	56	2	0	16	81	0.81
12788--12816	12	2.5	12	94	5	51	27	6	0	65	1.18
12723--13382	326	2.0	327	88	5	988	25	14	17	43	1.86
15480--15512	1	33.0	1	100	0	66	100	0	0	0	0.00
19370--19403	1	34.0	1	100	0	68	100	0	0	0	0.00
33502--33609	16	6.8	16	74	16	89	32	37	21	9	1.85
33502--33609	32	3.4	32	88	2	146	32	37	21	9	1.85
34162--34243	42	2.0	42	92	0	137	37	19	6	36	1.77
34470--34572	16	6.5	16	75	10	86	34	34	19	10	1.86
35975--36009	16	2.1	16	89	5	52	77	2	14	5	1.07
44893--44975	41	2.0	41	92	0	139	38	18	12	31	1.87
51710--51762	22	2.3	23	93	6	90	30	16	11	41	1.84
54618--54653	18	2.0	18	100	0	72	55	5	22	16	1.62
55640--55774	68	2.0	67	92	1	225	42	14	12	30	1.83
56111--56146	6	6.2	6	87	6	56	0	16	50	33	1.46
61057--61436	156	2.4	158	77	8	416	34	19	15	30	1.93
64905--64949	16	2.4	21	65	34	55	22	22	17	37	1.94
64911--64947	16	2.3	16	100	0	74	24	18	18	37	1.94
69652--69676	2	12.5	2	100	0	50	48	0	0	52	1.00
69983--70100	33	3.7	33	76	19	140	36	8	16	38	1.79
70028--70074	14	3.1	15	90	9	78	29	6	8	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70028--70081	14	3.8	14	79	16	58	35	7	9	48	1.63
70459--70504	24	1.9	24	86	8	67	80	0	15	4	0.86
70445--70505	14	4.6	14	75	21	60	81	0	13	4	0.83
71757--71787	16	1.9	16	93	0	53	25	29	3	41	1.71
71807--71913	8	13.4	8	68	13	60	28	21	3	46	1.68
71807--71865	24	2.5	24	86	5	75	27	23	3	45	1.68
71825--71922	24	4.0	24	76	10	92	28	21	4	45	1.70
71898--72029	58	2.3	58	80	5	142	21	22	12	43	1.85
72035--72305	14	19.9	14	66	22	114	29	21	5	43	1.76
72007--72128	22	5.5	21	75	19	90	30	22	4	41	1.75
72022--72159	66	2.1	66	91	2	217	28	23	5	42	1.75
72050--72164	22	5.2	22	75	17	105	28	22	5	43	1.75
72036--72188	36	4.4	36	78	11	176	29	21	5	43	1.76
72036--72278	66	3.9	65	75	15	215	30	20	5	42	1.76
72149--72321	22	8.0	22	72	8	106	31	20	5	41	1.76
72289--72342	22	2.6	20	88	5	72	27	24	3	44	1.70
75456--75523	16	4.3	16	92	3	111	25	16	19	39	1.91
75456--75523	31	2.2	32	91	2	111	25	16	19	39	1.91
77455--77509	21	2.7	21	80	8	60	21	20	18	40	1.92
82421--82783	156	2.3	155	79	6	394	35	19	15	29	1.92
83313--83349	19	1.9	19	88	0	56	48	0	0	51	1.00
83315--83366	16	3.1	17	83	13	63	48	1	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84620--84650	2	15.5	2	93	0	53	45	0	0	54	0.99

Tables:   1

The End!