genome.fa.s7008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007008.1 Corchorus capsularis cultivar CVL-1 contig07029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65493

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2773--2811	19	2.0	19	85	5	51	30	12	17	38	1.88
4948--4994	23	2.0	23	100	0	94	40	4	29	25	1.75
4950--5004	23	2.5	22	91	5	85	40	3	25	30	1.73
8035--8416	182	2.1	183	96	1	696	25	15	16	41	1.88
9553--9577	2	12.5	2	100	0	50	52	48	0	0	1.00
10608--10685	33	2.4	33	82	4	86	24	10	23	42	1.85
10637--10700	33	1.9	33	90	0	101	23	9	23	43	1.82
12857--13121	134	2.0	136	93	1	453	40	16	18	25	1.91
15443--15479	19	2.0	18	89	5	56	40	8	21	29	1.82
17006--17580	35	15.7	35	85	7	596	44	10	17	27	1.82
17006--17543	146	3.7	145	85	3	674	44	11	17	27	1.82
17003--17654	35	17.8	36	81	10	265	44	10	18	26	1.83
17003--17580	181	3.2	180	80	10	663	44	10	17	26	1.82
17410--17655	74	3.4	72	84	7	259	42	8	21	26	1.82
17410--17662	37	6.9	36	82	9	230	43	8	20	27	1.81
17670--17745	38	2.0	40	92	5	129	46	13	19	21	1.84
17670--17853	35	5.0	38	84	5	157	46	11	17	24	1.81
17718--18129	36	11.7	35	78	7	244	43	9	19	27	1.81
17673--17875	72	2.8	72	78	5	203	45	13	17	24	1.84
17927--18133	72	2.9	72	87	4	271	42	5	22	29	1.77
24422--24457	16	2.2	16	90	0	54	52	30	13	2	1.55
24603--24679	31	2.4	32	85	8	104	37	37	7	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28512--28754	133	1.8	136	94	2	438	41	17	20	21	1.91
39731--39764	17	1.9	18	88	5	52	20	14	5	58	1.57
42897--42921	13	1.9	13	100	0	50	16	8	4	72	1.24
45431--46220	37	21.3	36	80	10	506	44	10	18	26	1.81
45426--45893	186	2.5	183	83	7	568	44	12	17	25	1.84
45782--46236	37	12.4	37	83	6	518	43	8	20	27	1.80
46278--46656	36	10.8	35	79	9	265	45	10	17	26	1.80
46239--46433	72	2.7	73	81	7	220	47	12	15	24	1.80
46248--46433	37	5.1	36	87	4	216	47	11	16	25	1.79
48190--48263	37	2.0	37	97	0	139	33	18	25	21	1.96
54655--54690	19	1.9	18	88	5	54	36	22	0	41	1.54
62597--63450	143	6.0	142	88	5	1194	32	16	9	40	1.81
62597--63453	178	4.8	176	86	5	1122	32	16	9	40	1.81
62597--63453	35	24.1	35	86	5	1100	32	16	9	40	1.81

Tables:   1

The End!