genome.fa.s7011.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007011.1 Corchorus capsularis cultivar CVL-1 contig07032, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46115

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796--1831	19	1.9	18	88	5	54	33	22	2	41	1.68
10039--10070	16	2.0	16	93	0	55	31	40	18	9	1.83
10171--10526	51	7.1	50	85	5	425	34	17	25	23	1.96
10534--10624	35	2.5	37	76	18	100	41	18	21	17	1.90
10697--10726	15	2.0	15	93	0	51	26	23	26	23	2.00
13488--13574	24	3.5	24	90	3	129	26	36	19	17	1.94
28323--28369	22	2.2	22	88	11	71	12	12	8	65	1.46
29331--29389	30	2.0	30	96	0	109	6	22	42	28	1.79
37777--37817	20	2.0	20	95	0	73	9	31	34	24	1.88
38776--38843	33	2.1	33	81	10	77	27	8	20	42	1.82
38853--38961	33	3.3	33	92	0	182	24	11	17	45	1.82
39300--39362	30	2.1	30	85	5	83	30	15	31	22	1.95
42560--42828	22	12.5	21	75	12	210	19	19	6	54	1.65
42575--42828	43	5.9	43	83	5	316	19	19	7	54	1.66
42541--42824	129	2.2	129	91	1	435	20	19	6	53	1.66
42575--42828	129	2.0	129	96	0	472	19	19	7	54	1.66
42812--42880	35	2.0	35	82	0	84	20	21	4	53	1.62
43067--43233	72	2.3	72	89	0	244	26	17	6	49	1.71
43117--43240	39	3.3	39	71	21	120	26	18	6	48	1.72
43379--43516	55	2.5	55	90	0	213	25	19	5	50	1.68
44199--44559	51	7.2	50	77	5	368	36	16	5	41	1.71
44202--44570	102	3.7	100	88	2	540	36	16	5	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44201--44570	202	1.8	202	88	2	573	35	16	5	41	1.72
44556--44594	20	2.0	20	94	0	69	35	15	12	35	1.86

Tables:   1

The End!