Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007017.1 Corchorus capsularis cultivar CVL-1 contig07038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30296

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6040--6147
54
2.0
54
94
0
189
26
16
4
51
1.64
6479--6518
11
3.6
11
82
0
53
75
20
5
0
0.99
9194--9236
6
7.2
6
100
0
86
48
34
0
16
1.46
9242--9348
38
2.8
38
92
1
180
22
35
20
21
1.96
13878--13919
14
3.0
14
82
10
50
28
4
0
66
1.12
16249--16276
14
2.0
14
100
0
56
50
14
21
14
1.78
20413--20453
18
2.3
18
86
0
55
51
24
19
4
1.66
20360--20514
47
3.3
46
82
3
166
47
18
25
7
1.75
20503--20573
28
2.8
24
82
8
79
47
19
26
5
1.71
21169--21203
17
2.1
17
89
10
54
71
11
2
14
1.25
22617--22645
12
2.3
13
94
5
51
79
0
0
20
0.74
22567--22703
66
2.1
65
85
8
190
59
5
8
27
1.46
22682--22723
17
2.4
18
80
11
52
73
0
2
23
0.94
22794--22865
29
2.4
30
77
11
85
31
15
26
26
1.95

Tables:   1

The End!