Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007020.1 Corchorus capsularis cultivar CVL-1 contig07041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40466

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3909--3961
27
2.0
27
100
0
106
35
3
7
52
1.48
6389--6414
2
13.0
2
100
0
52
50
0
0
50
1.00
8345--8395
25
2.0
25
88
0
75
13
27
17
41
1.87
15387--15450
29
2.3
28
82
12
71
34
1
7
56
1.38
16016--16040
11
2.3
11
100
0
50
24
8
24
44
1.80
17342--17390
25
2.0
25
91
0
80
14
30
18
36
1.90
30691--30724
6
5.5
6
93
6
59
52
14
0
32
1.42
30686--30731
19
2.6
17
83
10
65
52
17
4
26
1.63
40328--40432
40
2.6
40
84
6
113
53
3
19
23
1.61
40357--40432
40
1.9
40
91
5
127
52
3
21
22
1.63
40430--40466
17
2.2
18
85
9
51
59
2
24
13
1.47

Tables:   1

The End!