Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007021.1 Corchorus capsularis cultivar CVL-1 contig07042, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61945

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1714--1802
23
4.0
23
84
8
89
57
4
20
17
1.57
1703--1928
22
10.7
21
72
17
150
56
5
19
18
1.60
5789--5880
27
3.5
26
82
7
105
19
21
5
53
1.65
5897--6064
7
23.7
7
66
14
60
20
21
4
54
1.61
5897--6462
14
38.6
14
65
17
86
21
20
3
54
1.59
5897--5998
29
3.6
29
70
13
95
20
20
2
55
1.56
5889--6604
36
20.2
36
76
10
536
21
20
3
54
1.60
6182--6457
7
38.7
7
71
16
90
20
21
2
56
1.53
6175--6462
22
13.4
21
65
19
87
20
21
2
55
1.53
6175--6227
27
2.0
27
85
7
72
24
20
0
54
1.44
6209--6254
15
3.1
15
79
17
51
19
21
2
56
1.52
6268--6461
86
2.3
85
87
7
268
20
21
2
55
1.55
6303--6568
86
3.0
88
84
9
342
20
20
3
55
1.57
6447--6545
29
3.4
29
70
10
85
22
20
6
51
1.69
6312--6582
95
2.9
96
87
7
334
20
20
3
54
1.59
6535--6608
7
10.3
7
71
16
53
17
21
1
59
1.45
6535--6608
29
2.6
29
82
4
87
17
21
1
59
1.45
12617--12651
12
2.9
12
95
0
61
80
2
8
8
1.01
13061--13114
25
2.2
25
86
0
72
31
16
9
42
1.80
15960--16268
35
8.7
35
88
2
388
38
9
19
31
1.84
16253--16279
14
1.9
14
100
0
54
40
0
29
29
1.57
22306--22340
13
2.7
13
95
0
61
60
8
11
20
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23057--23415
179
2.0
179
97
0
682
32
10
24
32
1.90
23429--23453
10
2.5
10
100
0
50
24
8
20
48
1.76
29184--29210
6
4.5
6
100
0
54
55
14
0
29
1.40
30962--31016
28
2.0
28
96
0
101
27
18
18
36
1.94
34792--34840
22
2.2
22
85
0
62
42
12
4
40
1.61
34950--35182
22
10.6
22
72
5
166
34
12
10
42
1.78
38531--38591
20
3.2
18
76
15
59
73
1
22
1
1.01
38531--38579
9
5.2
9
80
7
53
75
2
20
2
1.00
46287--46316
2
15.0
2
100
0
60
50
0
0
50
1.00
51642--51794
53
2.9
51
85
11
193
38
28
13
19
1.90
51749--51850
30
3.4
30
80
10
109
41
28
10
19
1.85
59469--59522
7
7.3
7
87
8
72
51
27
0
20
1.47
59469--59522
15
3.6
15
87
9
83
51
27
0
20
1.47
59469--59522
22
2.4
23
93
3
92
51
27
0
20
1.47

Tables:   1

The End!