Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007027.1 Corchorus capsularis cultivar CVL-1 contig07048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22595

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1522--1586
31
2.2
29
83
5
76
27
21
13
36
1.92
2700--2763
31
2.1
31
87
0
92
26
28
3
42
1.70
5799--5826
1
28.0
1
100
0
56
100
0
0
0
0.00
10214--10255
22
1.9
22
85
0
57
11
23
23
40
1.88
10415--10490
16
4.8
16
85
0
98
39
39
13
7
1.73
11253--11292
15
2.6
16
84
8
55
37
32
20
10
1.85
12308--12359
28
1.9
26
92
7
86
55
0
9
34
1.32
16260--16326
20
3.2
21
73
8
57
59
2
34
2
1.28
17141--17188
17
2.9
16
78
12
53
43
37
12
6
1.68
17340--17370
2
15.5
2
100
0
62
51
0
0
48
1.00
17683--17720
20
1.9
20
84
10
51
13
15
15
55
1.70
17727--17786
24
2.6
23
76
5
66
11
10
11
66
1.45
18072--18206
16
8.6
16
79
9
152
7
22
36
34
1.82
18080--18221
47
3.0
46
76
16
148
7
21
36
33
1.82
18084--18202
63
1.9
63
87
6
179
7
21
36
33
1.82
18168--18215
25
1.9
24
84
16
62
6
27
37
29
1.81
18668--18715
21
2.3
21
88
0
78
56
6
8
29
1.53
18825--18933
32
3.4
32
86
8
143
8
18
38
34
1.81
18823--18954
48
2.8
48
79
9
144
8
18
37
34
1.81
18825--18933
16
6.8
16
77
12
116
8
18
38
34
1.81

Tables:   1

The End!