Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007028.1 Corchorus capsularis cultivar CVL-1 contig07049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16684
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31


Found at i:14345 original size:27 final size:26

Alignment explanation


    Indices: 14311--14379  Score: 102
    Period size: 27  Copynumber: 2.6  Consensus size: 26

      14301 GAGTTATACA

                     *                
      14311 AGGGCATTTTGGTCATTTTTACATTC
          1 AGGGCATTTAGGTCATTTTTACATTC

                        *              
      14337 AGGGACATTTAGATCATTTTTACATTC
          1 AGGG-CATTTAGGTCATTTTTACATTC

                            
      14364 AGGGGCATTTAGGTCA
          1 A-GGGCATTTAGGTCA

      14380 GTTTAAGTTT


Statistics
Matches: 38,  Mismatches: 3, Indels: 3
        0.86            0.07        0.07

Matches are distributed among these distances:
  26    4  0.11
  27   31  0.82
  28    3  0.08

ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39


Consensus pattern (26 bp):   
AGGGCATTTAGGTCATTTTTACATTC
Done.