Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007029.1 Corchorus capsularis cultivar CVL-1 contig07050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24482

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2627--2673
19
2.3
20
82
7
60
78
0
14
6
0.93
2739--2790
14
3.6
14
84
2
59
42
7
11
38
1.70
3133--3161
12
2.3
13
94
5
51
75
3
20
0
0.94
3789--3826
10
3.7
10
86
13
51
89
2
7
0
0.57
4593--4760
35
4.8
35
85
0
192
17
21
20
40
1.91
4749--5023
70
3.9
70
89
0
415
21
20
20
37
1.95
5022--5110
36
2.4
36
88
5
126
21
14
25
38
1.92
5598--5672
27
2.8
27
93
0
132
22
14
21
41
1.89
10746--10864
16
7.5
16
82
5
125
7
20
36
35
1.81
10748--10864
32
3.7
32
82
3
139
7
20
37
34
1.81
10776--10879
48
2.2
47
86
3
145
4
20
43
31
1.72
11265--11311
21
2.2
21
88
0
76
51
6
8
34
1.58
11428--11520
16
5.9
15
73
19
73
9
19
39
31
1.84
11430--11520
32
2.8
32
89
0
128
9
18
40
30
1.83
11575--11626
26
2.0
27
88
3
79
7
17
50
25
1.72
13726--13862
39
3.4
41
88
8
192
48
8
14
28
1.74
13830--14107
31
8.4
30
70
21
139
46
9
18
26
1.79
13889--14019
39
3.5
38
70
22
116
44
9
19
25
1.82
13999--14110
31
3.6
31
81
11
156
50
4
19
25
1.67
13859--14311
70
6.5
70
91
3
659
43
9
19
27
1.81
13859--14311
133
3.3
135
89
5
631
43
9
19
27
1.81
14093--14286
39
5.4
39
69
26
176
42
7
21
28
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14122--14180
31
2.0
30
90
6
93
44
5
18
32
1.72
13860--14260
203
2.0
205
91
1
653
44
8
19
26
1.80
14334--14479
40
3.7
40
92
0
229
49
9
14
26
1.74
14485--14807
41
8.0
41
89
3
494
45
10
22
21
1.81
14485--14806
160
2.0
162
90
4
517
45
10
22
21
1.81
14485--14791
119
2.5
119
90
2
479
45
10
22
20
1.82
17124--17186
30
2.1
30
88
5
92
19
34
15
30
1.93
20935--20960
10
2.6
10
100
0
52
23
7
19
50
1.73

Tables:   1

The End!