Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007032.1 Corchorus capsularis cultivar CVL-1 contig07053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64162

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
969--1090
22
5.3
23
79
10
87
43
4
20
31
1.73
1022--1096
6
11.2
6
74
23
53
48
2
18
30
1.62
1016--1169
8
20.0
8
64
14
65
46
3
21
29
1.67
910--1097
14
12.4
14
67
24
82
44
4
20
30
1.72
1019--1113
29
3.4
29
81
8
90
47
4
20
28
1.68
1033--1133
51
2.0
51
82
0
121
44
4
20
29
1.73
2940--2989
13
3.7
13
80
17
57
46
4
10
40
1.56
2918--3040
62
2.0
64
84
9
164
40
10
8
39
1.71
3007--3040
16
2.2
16
94
5
61
55
5
8
29
1.54
3359--3393
2
17.5
2
100
0
70
51
0
0
48
1.00
10799--10859
17
3.4
17
82
12
86
29
22
29
18
1.97
10843--10959
45
2.6
45
80
10
123
27
17
24
29
1.98
10875--10960
45
1.9
45
88
9
131
26
17
26
29
1.98
11546--11719
40
4.4
40
78
7
158
24
18
19
37
1.94
11696--11965
110
2.5
112
86
6
365
30
20
22
25
1.98
12966--13054
46
1.9
46
93
0
151
38
8
22
30
1.85
13991--14025
2
17.5
2
100
0
70
51
0
0
48
1.00
16425--16474
2
24.5
2
87
4
73
4
48
0
48
1.20
18650--18741
33
3.0
30
75
12
87
28
40
25
6
1.80
26583--26635
2
25.5
2
84
7
70
45
0
3
50
1.19
27089--27195
33
3.3
32
85
3
117
16
40
33
9
1.81
36291--36323
17
1.9
17
88
11
50
0
15
0
84
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36287--36324
18
2.1
19
85
14
53
0
18
0
81
0.69
37513--37547
5
7.0
5
96
0
52
85
14
0
0
0.59
38136--38353
109
2.0
109
94
1
384
32
18
12
36
1.89
47071--47105
4
8.2
4
87
12
52
22
2
0
74
0.95
47580--47619
20
2.1
19
85
4
53
17
5
15
62
1.49
47731--47786
27
2.1
27
100
0
112
21
21
14
42
1.88
58297--58338
20
2.1
21
86
8
61
28
7
7
57
1.52
61042--61133
28
3.1
28
67
17
78
22
22
21
32
1.98
61016--61174
60
2.7
60
87
0
246
23
22
22
31
1.98
61154--61197
23
1.9
23
95
0
79
29
22
15
31
1.95
61096--61257
83
2.0
83
89
0
252
24
22
21
31
1.98
61179--61368
32
6.3
31
66
18
98
22
24
22
31
1.99
61177--61439
60
4.4
60
84
0
321
23
25
21
29
1.99
61185--61282
28
3.4
28
73
15
99
22
22
21
33
1.97
61034--61317
143
2.0
143
95
0
514
23
22
21
31
1.98
61015--61381
203
1.8
202
87
0
554
23
23
22
30
1.99
61177--61447
120
2.3
120
86
0
382
23
25
22
29
1.99
61423--61480
28
2.1
29
83
6
75
22
24
20
32
1.98

Tables:   1

The End!