Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007036.1 Corchorus capsularis cultivar CVL-1 contig07057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48846

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3402--4751
438
3.1
436
85
3
1489
41
14
13
30
1.84
3436--4759
443
3.0
437
85
3
1592
41
14
12
30
1.83
4964--5002
2
20.5
2
89
10
64
53
0
0
46
1.00
9409--9456
21
2.3
21
85
0
60
54
0
25
20
1.45
12657--12740
31
2.7
31
92
1
134
42
8
17
30
1.79
16095--16169
29
2.6
31
77
14
79
45
1
0
53
1.08
16116--16157
19
2.1
21
86
8
61
45
0
0
54
0.99
22696--22852
78
2.0
79
94
1
280
30
14
19
36
1.91
23322--23347
2
13.0
2
100
0
52
50
0
0
50
1.00
32603--32648
23
2.1
22
84
15
60
30
6
2
60
1.34
43833--44459
328
1.9
328
83
5
820
42
14
18
23
1.88
48352--48389
3
12.3
3
94
5
67
34
2
0
63
1.09
48346--48388
22
2.0
22
90
0
68
37
2
0
60
1.10
48354--48404
22
2.3
22
83
6
59
33
3
0
62
1.13

Tables:   1

The End!