Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007038.1 Corchorus capsularis cultivar CVL-1 contig07059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50567

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15074--15141
36
1.9
35
96
3
127
45
8
10
35
1.69
17862--17903
21
2.0
21
85
0
57
16
26
7
50
1.71
20722--20761
21
1.9
21
89
0
62
42
2
0
55
1.13
22744--22775
15
2.2
15
94
5
57
0
12
0
87
0.54
23214--23581
125
2.9
126
90
2
564
37
7
15
39
1.75
26543--26602
19
3.0
20
78
7
68
30
10
18
41
1.83
30433--30471
1
39.0
1
100
0
78
0
0
0
100
0.00
34061--34175
58
2.0
58
85
0
158
32
27
18
21
1.97
36859--36899
20
2.0
20
100
0
82
43
19
0
36
1.51
38340--38373
2
17.0
2
100
0
68
50
0
0
50
1.00
39841--39894
28
1.9
28
100
0
108
35
5
14
44
1.69
41848--41877
15
1.9
15
93
6
51
73
13
10
3
1.21
41841--41892
16
3.3
16
79
15
56
80
11
5
1
0.96
44282--44392
51
2.2
51
93
0
186
43
1
17
37
1.59
44357--44450
31
3.2
30
65
25
74
37
4
17
41
1.69
44406--44580
50
3.5
49
78
12
142
40
6
17
35
1.76
44442--44580
50
2.8
49
80
9
156
42
7
16
33
1.77
45321--45805
49
10.0
49
88
2
629
23
30
13
32
1.93
47477--47512
17
2.1
17
100
0
72
38
13
8
38
1.75
48774--48886
2
61.5
2
70
22
79
46
6
0
46
1.27
48774--48833
26
2.4
26
89
10
90
46
1
0
51
1.10
48987--49055
34
2.0
35
88
2
104
49
20
4
26
1.67

Tables:   1

The End!