Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000704.1 Corchorus capsularis cultivar CVL-1 contig00704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2338
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.33


Found at i:830 original size:1 final size:1

Alignment explanation


    Indices: 824--853  Score: 60
    Period size: 1  Copynumber: 30.0  Consensus size: 1

        814 TAAATTTGAA

                                          
        824 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

        854 GGGAAGCAGT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:2316 original size:2 final size:2

Alignment explanation


    Indices: 2309--2338  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       2299 TTTTATTAAT

                                                        
       2309 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.