genome.fa.s7044.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007044.1 Corchorus capsularis cultivar CVL-1 contig07065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52591

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1821--1928	33	3.4	33	83	3	123	42	18	9	29	1.81
1992--2079	33	2.7	33	90	0	122	39	17	11	31	1.85
3669--3702	8	4.1	8	85	7	50	23	2	14	58	1.50
4592--4736	33	4.4	34	86	4	192	9	26	40	23	1.85
5622--5726	53	2.0	54	94	1	185	27	15	22	34	1.94
5706--6235	107	4.9	107	82	5	547	27	19	22	29	1.98
5726--6128	159	2.5	160	87	6	559	28	19	23	29	1.98
5709--6235	54	9.8	54	82	5	536	27	19	22	29	1.98
7608--7638	13	2.3	14	94	5	55	29	0	6	64	1.18
7685--7762	15	5.4	14	73	16	61	25	10	1	62	1.34
7738--7796	15	4.1	15	72	16	54	25	13	1	59	1.44
7715--7851	27	5.2	27	71	14	83	25	12	1	60	1.40
8691--8765	33	2.2	33	85	2	105	17	26	4	52	1.62
9811--9835	13	1.9	13	100	0	50	60	0	40	0	0.97
10109--10161	25	2.1	25	92	0	88	13	18	9	58	1.61
18295--18338	6	7.3	6	100	0	88	84	0	0	15	0.63
27512--27544	13	2.3	15	90	10	52	9	12	3	75	1.14
38488--38513	3	8.7	3	100	0	52	65	0	34	0	0.93
39287--40293	35	28.7	35	80	10	922	38	9	18	33	1.83
39287--40293	248	4.1	242	85	7	1114	38	9	18	33	1.83
40077--40136	21	3.2	21	63	30	53	36	11	20	31	1.88
41535--41560	10	2.6	10	100	0	52	50	19	7	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42498--42526	6	4.8	6	100	0	58	34	0	17	48	1.47
43251--43302	10	4.9	10	73	13	50	5	23	48	23	1.72
43252--43359	33	3.3	33	78	8	94	8	25	43	23	1.81
45147--45325	33	5.4	33	97	0	331	43	16	11	29	1.82
45311--45407	33	2.9	33	79	0	113	45	20	8	25	1.79
46812--46846	9	3.8	9	96	3	61	14	0	0	85	0.59
47859--48003	33	4.4	33	84	5	134	9	26	40	22	1.85
47863--48003	66	2.1	65	84	5	176	9	26	41	21	1.83
49895--49932	20	2.0	20	89	5	60	39	5	26	28	1.78
50815--50874	21	2.9	21	74	0	66	35	13	21	30	1.92
51348--51379	13	2.4	14	85	15	50	53	12	6	28	1.62

Tables:   1

The End!