Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007045.1 Corchorus capsularis cultivar CVL-1 contig07066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21245

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2953--3019
27
2.5
27
95
2
118
16
16
22
44
1.86
5960--6337
50
7.4
50
89
3
506
42
9
11
36
1.74
7216--7684
55
8.6
55
94
1
784
49
5
18
26
1.70
7601--7687
26
3.3
26
70
17
72
49
8
18
24
1.74
7647--7760
34
3.3
33
75
17
106
49
7
15
28
1.71
7666--7771
34
3.0
36
76
18
139
50
4
16
29
1.65
8271--8312
17
2.5
17
85
11
59
57
2
16
23
1.51
8274--8313
18
2.3
18
91
4
64
60
2
15
22
1.47
8204--8295
26
3.3
26
74
21
96
60
1
18
19
1.42
11292--11374
42
2.0
43
85
7
116
25
18
20
36
1.95
11544--11571
14
2.0
14
100
0
56
50
0
0
50
1.00
11781--11808
12
2.3
12
100
0
56
53
32
14
0
1.41
14155--14197
2
23.0
2
86
13
65
53
0
0
46
1.00
14155--14205
8
5.7
9
88
11
70
52
1
0
45
1.12
17287--17346
16
3.8
16
77
0
75
45
31
13
10
1.76
17281--17351
32
2.2
32
92
0
115
42
35
14
8
1.75
17694--17753
28
2.1
28
87
6
84
51
0
13
35
1.41
19582--19647
32
2.1
32
100
0
132
27
9
15
48
1.74

Tables:   1

The End!