genome.fa.s7046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007046.1 Corchorus capsularis cultivar CVL-1 contig07067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63036

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551--593	18	2.4	17	77	11	50	9	2	16	72	1.21
2362--2392	12	2.6	12	89	0	53	9	29	41	19	1.83
2345--2436	42	2.2	42	88	3	132	8	28	42	20	1.82
3602--3658	30	1.9	30	96	0	105	22	28	19	29	1.98
4106--4169	33	1.9	33	87	0	92	43	21	9	25	1.82
4106--4198	33	2.8	33	80	3	89	43	19	9	27	1.82
5873--5902	13	2.2	14	94	5	53	16	0	0	83	0.65
6849--6888	21	1.9	21	85	10	55	27	27	22	22	1.99
11518--11592	33	2.3	33	88	0	105	24	38	29	8	1.83
11538--11629	33	2.8	33	86	3	114	27	40	25	7	1.82
12646--12680	10	3.7	9	88	11	52	82	2	0	14	0.77
14190--14273	33	2.5	33	86	0	114	33	9	16	40	1.81
16038--16126	33	2.7	33	76	13	85	23	41	24	10	1.85
16067--16129	33	1.9	33	90	0	99	23	39	25	11	1.88
20688--20750	30	2.1	30	91	5	101	30	17	33	19	1.95
24099--24979	443	2.0	441	90	1	1397	40	19	14	26	1.89
27301--27336	18	2.1	17	94	5	63	63	8	16	11	1.49
29225--29412	95	2.0	94	94	3	335	32	13	7	46	1.71
29585--29847	107	2.5	105	88	4	397	41	9	8	40	1.67
30312--30343	2	16.5	2	93	6	57	50	0	0	50	1.00
34262--34295	8	4.1	8	92	7	59	61	14	0	23	1.33
34261--34295	17	2.1	17	94	0	61	62	14	0	22	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35137--35195	30	2.0	30	90	6	93	32	18	28	20	1.96
39041--39094	18	3.0	18	83	0	63	29	24	11	35	1.90
44537--44637	33	3.1	33	80	4	107	22	40	26	9	1.85
44619--44682	33	1.9	33	93	0	110	21	46	23	7	1.77
45569--45602	8	4.1	8	85	7	50	58	14	2	23	1.50
47150--47321	33	5.3	33	88	2	251	29	10	18	41	1.83
47117--47321	66	3.2	66	81	4	177	30	10	18	40	1.84
48758--48865	33	3.3	33	83	5	121	21	41	27	9	1.83
48849--48893	23	2.0	23	95	0	81	24	46	22	6	1.75
48858--48894	10	3.2	12	78	21	51	24	45	21	8	1.78
52651--52690	7	5.9	7	85	2	55	30	0	0	70	0.88
53449--53492	21	2.0	22	91	8	72	40	13	27	18	1.88
57195--57227	16	2.0	17	88	5	50	51	6	21	21	1.69

Tables:   1

The End!