Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007053.1 Corchorus capsularis cultivar CVL-1 contig07074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35593

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5588--5642
27
2.0
27
100
0
110
14
21
10
52
1.72
5646--5673
2
14.0
2
100
0
56
50
0
0
50
1.00
6852--6886
12
3.0
12
87
8
54
37
0
0
62
0.95
6850--6881
12
2.8
11
90
9
55
34
0
0
65
0.93
8048--8101
24
2.2
25
80
9
67
29
5
7
57
1.49
8057--8101
24
1.9
24
90
4
74
26
6
6
60
1.47
9015--9048
11
3.2
10
84
15
50
29
2
17
50
1.61
10717--10790
35
2.1
34
82
7
87
28
5
10
55
1.56
10762--10840
25
3.1
25
71
18
74
41
7
12
37
1.72
14252--14284
15
2.4
14
90
10
50
6
6
3
84
0.84
15409--15436
2
14.0
2
100
0
56
50
0
0
50
1.00
15775--15808
11
3.2
10
84
15
50
29
2
17
50
1.61
26338--26372
13
2.7
13
95
0
61
17
8
11
62
1.52
26369--26407
6
6.5
6
91
8
62
30
0
15
53
1.42
27930--27972
15
2.6
17
82
10
54
34
16
16
32
1.91
31939--31989
26
2.0
26
92
0
84
27
15
11
45
1.81
31939--31988
13
3.8
13
76
12
50
26
16
12
46
1.81

Tables:   1

The End!