Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007057.1 Corchorus capsularis cultivar CVL-1 contig07078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67661

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1069--1629
289
1.9
291
98
0
1081
41
10
12
35
1.78
5911--5937
13
2.1
13
100
0
54
0
29
0
70
0.88
7498--7794
147
2.0
147
100
0
594
34
14
21
29
1.94
17259--17295
3
12.3
3
94
0
65
35
0
0
64
0.94
18463--18497
13
2.9
12
88
12
54
91
5
2
0
0.50
19088--19136
17
2.9
16
85
8
62
34
22
20
22
1.97
20230--20265
17
2.1
17
89
0
54
30
0
2
66
1.06
28886--28925
19
2.1
18
86
9
53
7
32
10
50
1.64
39450--39509
8
7.2
9
75
19
51
78
1
18
1
0.92
39456--39492
15
2.6
14
91
8
58
83
2
13
0
0.74
40264--40494
117
1.9
120
88
5
353
37
8
9
44
1.68
42761--42785
2
12.5
2
100
0
50
0
48
0
52
1.00
42988--43033
24
2.0
22
83
8
56
23
10
6
58
1.55
45368--45423
24
2.3
24
84
6
78
50
8
33
7
1.61
45392--45619
60
3.8
60
91
0
330
45
12
32
10
1.76
58083--58113
2
15.5
2
100
0
62
48
0
0
51
1.00
63848--63898
2
25.5
2
100
0
102
49
0
50
0
1.00
64673--64703
14
2.2
14
94
0
53
74
3
22
0
0.96

Tables:   1

The End!