Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007058.1 Corchorus capsularis cultivar CVL-1 contig07079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49300

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2166--2233
35
1.9
35
90
0
109
47
4
11
36
1.60
5008--5052
9
5.1
9
79
15
58
4
20
0
75
0.97
5009--5052
13
3.4
13
78
9
54
4
20
0
75
0.98
5462--5493
3
10.7
3
100
0
64
31
0
0
68
0.90
7538--7817
27
10.2
27
76
12
207
21
22
2
53
1.59
7642--7696
16
3.4
16
73
21
53
20
20
0
60
1.37
7616--7726
58
1.9
56
83
7
143
21
23
0
54
1.51
7764--7854
38
2.4
37
77
18
98
16
23
2
58
1.49
7802--7874
27
2.7
28
87
8
107
15
24
2
57
1.51
7743--7912
66
2.6
65
84
7
202
17
22
2
57
1.51
7829--7912
39
2.2
36
85
8
114
14
23
2
59
1.47
8015--8353
22
15.9
22
75
13
264
23
20
4
51
1.66
7889--8076
94
2.0
95
81
6
220
23
18
6
51
1.69
8015--8344
106
3.1
105
81
7
366
23
21
4
50
1.67
8392--8488
30
3.1
30
79
8
106
24
17
10
47
1.79
12866--12895
15
1.9
16
93
6
53
50
16
6
26
1.70
14665--14747
27
3.0
28
82
8
100
15
21
20
42
1.89
15964--16045
41
2.0
41
100
0
164
39
14
12
34
1.84
19918--20278
176
2.1
175
88
1
535
48
6
20
24
1.73
20625--20685
17
3.4
17
72
18
52
60
1
21
16
1.44
20534--20841
116
2.6
120
79
7
324
55
2
23
17
1.55
20529--20845
40
8.0
40
73
11
215
55
2
24
17
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21016--21078
32
2.0
32
93
0
108
52
4
28
14
1.62
21049--21100
22
2.4
22
90
0
77
57
5
21
15
1.58
21982--22013
12
2.6
12
95
5
55
21
0
18
59
1.38
26023--26047
9
2.8
9
100
0
50
84
0
0
16
0.63
34988--35033
21
2.2
21
88
0
65
19
26
21
32
1.97
40805--40853
21
2.3
20
80
10
53
26
38
4
30
1.75
43708--43765
30
1.9
30
93
6
100
29
18
31
20
1.97
44950--45001
22
2.3
23
86
3
70
19
23
7
50
1.73
44983--45038
15
3.9
15
74
9
62
16
19
5
58
1.56
45017--45297
21
13.6
20
69
16
148
19
20
6
53
1.67
44983--45201
43
5.3
41
73
15
109
17
21
6
54
1.65
45022--45297
64
4.4
63
71
15
200
19
21
6
52
1.68
45146--45257
43
2.6
42
80
6
136
23
17
6
52
1.67
45570--45875
55
5.6
55
87
1
429
24
18
6
50
1.70
45570--45875
108
2.8
109
85
1
418
24
18
6
50
1.70
46520--46759
51
4.7
51
76
5
209
36
16
5
41
1.72
46556--46811
50
5.1
50
75
6
225
37
17
5
39
1.72
46566--46811
101
2.5
101
87
4
340
37
17
4
40
1.70
48724--48760
16
2.2
17
86
13
51
18
2
5
72
1.15
49192--49261
27
2.6
27
88
0
95
44
21
17
17
1.87

Tables:   1

The End!