Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000706.1 Corchorus capsularis cultivar CVL-1 contig00706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 686

Length: 1144
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41


Found at i:236 original size:19 final size:20

Alignment explanation


    Indices: 212--260  Score: 64
    Period size: 19  Copynumber: 2.5  Consensus size: 20

        202 GGATTAGTTA

                                
        212 TTTAAGTTTATG-CTTTATC
          1 TTTAAGTTTATGTCTTTATC

                  *            *
        231 TTTAAGCTTATGTCTTTATT
          1 TTTAAGTTTATGTCTTTATC

                      
        251 TTTCAAGTTT
          1 TTT-AAGTTT

        261 CATTAATAAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  19   11  0.44
  20    9  0.36
  21    5  0.20

ACGTcount: A:0.20, C:0.10, G:0.10, T:0.59


Consensus pattern (20 bp):   
TTTAAGTTTATGTCTTTATC
Done.