Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007065.1 Corchorus capsularis cultivar CVL-1 contig07086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33078

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1378--1447
27
2.5
28
84
9
90
37
27
17
18
1.93
1513--1612
52
1.9
52
91
4
166
31
14
17
38
1.89
5500--5835
49
6.8
49
90
2
512
31
17
28
22
1.96
5500--5835
148
2.3
147
90
2
539
31
17
28
22
1.96
6221--6264
23
1.9
24
81
9
56
40
11
2
45
1.53
11935--12024
34
2.6
35
85
3
119
18
22
5
53
1.65
12004--12181
62
2.9
61
94
1
302
17
22
5
53
1.64
12046--12347
21
14.7
19
67
19
81
16
23
6
52
1.66
12074--12098
7
3.6
7
100
0
50
16
28
0
56
1.41
12136--12300
7
23.7
7
69
11
90
16
23
3
56
1.56
11979--12391
165
2.5
163
86
6
555
17
23
5
54
1.63
12169--12284
61
1.9
61
98
0
223
17
24
5
53
1.64
12065--12419
103
3.4
104
96
2
597
16
23
5
54
1.62
12132--12557
22
20.1
21
70
16
240
18
21
4
55
1.61
12344--12368
7
3.6
7
100
0
50
16
28
0
56
1.41
12272--12458
63
2.9
63
79
9
191
18
20
5
55
1.62
16215--16247
12
2.8
12
90
0
57
21
6
9
63
1.45
16244--16270
6
4.5
6
100
0
54
29
0
14
55
1.40
17254--17322
6
12.3
6
76
17
69
84
0
0
15
0.63
17257--17324
22
3.2
21
85
8
93
85
0
0
14
0.60
17257--17324
21
3.2
20
84
13
84
85
0
0
14
0.60
17259--17326
29
2.3
29
87
12
95
83
0
0
16
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17757--17796
20
2.0
20
100
0
80
25
10
10
55
1.64
17930--17958
15
1.9
15
100
0
58
51
6
13
27
1.66
19791--19832
2
22.5
2
81
13
54
52
0
0
47
1.00
19791--19833
11
3.9
11
93
0
77
53
0
0
46
1.00
19920--19954
18
1.9
18
100
0
70
37
34
17
11
1.85
26877--26907
11
2.8
11
95
0
53
0
3
19
77
0.90
27500--27630
45
2.9
45
94
0
217
33
18
22
25
1.97
28014--28072
21
2.8
22
73
17
61
47
0
6
45
1.29
28156--28197
2
21.5
2
85
4
50
59
0
0
40
0.97
28168--28197
15
2.0
15
93
0
51
56
0
0
43
0.99
28266--28701
167
2.6
166
83
4
556
30
15
14
39
1.87
32929--32967
19
1.9
20
85
15
53
2
17
7
71
1.21

Tables:   1

The End!