Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007069.1 Corchorus capsularis cultivar CVL-1 contig07090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21513

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56--194
31
4.5
31
78
7
149
34
17
19
28
1.95
223--451
31
7.6
29
73
12
160
25
17
20
36
1.95
254--416
60
2.7
60
92
1
247
25
18
20
35
1.95
288--381
29
3.2
29
69
16
93
27
20
19
32
1.96
732--763
7
4.6
7
96
0
55
90
9
0
0
0.45
732--798
5
13.2
5
76
16
50
82
13
4
0
0.82
731--800
19
4.1
17
74
18
65
80
12
7
0
0.91
3597--4066
22
21.5
22
67
12
134
35
15
10
38
1.81
3725--3810
45
1.9
45
83
4
111
38
15
11
34
1.83
3850--3964
23
5.0
23
82
6
99
39
16
9
34
1.81
3860--3964
45
2.3
46
85
4
133
39
14
10
36
1.80
4086--4144
22
2.7
22
81
5
66
40
8
11
38
1.72
4269--4493
22
10.3
22
71
13
126
32
13
9
44
1.76
4244--4563
44
7.2
44
66
13
131
33
15
9
42
1.78
4244--4409
88
1.9
86
81
10
203
32
15
8
43
1.76
4379--4459
21
3.6
22
78
16
78
35
8
9
45
1.68
4513--4858
22
16.0
22
69
16
122
38
17
8
34
1.81
4732--4858
44
2.9
45
79
8
136
40
17
10
32
1.83
5132--5180
25
2.0
24
84
4
62
53
2
0
44
1.12
6460--6525
31
2.1
31
94
0
114
45
4
21
28
1.71
6554--6587
2
16.5
2
87
6
50
47
0
5
47
1.26
10484--10586
51
2.0
50
96
1
188
39
28
0
31
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11703--11844
70
2.0
71
98
1
277
38
5
0
55
1.23
13750--13824
29
2.6
28
87
4
105
18
22
17
41
1.90
13995--14052
29
2.0
29
86
3
80
39
12
25
22
1.89
20135--20199
34
1.9
34
96
0
121
60
4
12
23
1.51

Tables:   1

The End!