Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007070.1 Corchorus capsularis cultivar CVL-1 contig07091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20145

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
954--979
1
26.0
1
100
0
52
100
0
0
0
0.00
4078--4127
25
2.0
25
88
0
73
32
16
14
38
1.88
6987--7059
25
3.2
25
61
31
63
24
20
5
49
1.70
6976--7059
43
2.0
43
100
0
168
25
20
4
50
1.68
6979--7085
43
2.5
43
86
6
128
25
19
8
46
1.78
8577--8622
15
3.3
14
85
14
60
76
8
10
4
1.15
9694--9727
11
3.3
11
84
16
54
91
0
0
8
0.43
9701--9726
9
2.9
9
100
0
52
92
0
0
7
0.39
9692--9724
16
2.1
16
88
11
50
87
0
0
12
0.53
9827--10117
49
5.9
49
82
6
320
21
27
18
32
1.96
9827--10068
99
2.4
98
82
6
299
22
26
16
33
1.96
9840--10165
49
6.7
47
77
11
191
21
26
19
32
1.97
12664--13107
167
2.7
164
87
4
597
40
15
14
29
1.87
13234--13299
31
2.1
31
86
10
91
30
18
6
45
1.73
13415--13497
38
2.2
38
80
2
105
13
16
10
59
1.62
14616--14653
19
2.0
20
85
15
53
28
5
2
63
1.30
14819--14949
66
2.0
66
83
3
165
35
11
15
37
1.83
14817--15002
22
8.4
22
74
10
139
33
9
18
38
1.83
15056--15177
22
5.6
21
73
12
95
36
6
21
36
1.79
15217--15368
22
6.9
21
73
20
80
40
11
13
34
1.81
15200--15343
22
6.5
22
75
10
84
40
11
13
34
1.80
15365--15415
22
2.2
23
79
10
59
45
9
21
23
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15376--15429
22
2.5
22
90
0
81
44
11
11
33
1.75
15536--15604
19
3.4
20
84
8
86
42
10
17
30
1.82
15573--15653
22
3.7
22
77
6
92
40
9
11
38
1.74
15573--15672
44
2.3
43
84
6
130
40
10
12
38
1.76

Tables:   1

The End!