Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007072.1 Corchorus capsularis cultivar CVL-1 contig07093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3129
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30


Found at i:3129 original size:54 final size:52

Alignment explanation


    Indices: 3028--3129  Score: 125
    Period size: 52  Copynumber: 1.9  Consensus size: 52

       3018 GTACAAGCTT

                  *    * *    *                       *         
       3028 TTTTTAGTTTAGAGATTGGATCTTTTGTTCATAACATGTAAAGAGTAAAATC
          1 TTTTTAATTTAAAAATTGAATCTTTTGTTCATAACATGTAAAAAGTAAAATC

                                                               
       3080 TTTTTAATTTAAAAATTGAATCTTTTGTTCATATA-ATGTGTAAAAAGTAA
          1 TTTTTAATTTAAAAATTGAATCTTTTGTTCATA-ACA--TGTAAAAAGTAA


Statistics
Matches: 42,  Mismatches: 5, Indels: 4
        0.82            0.10        0.08

Matches are distributed among these distances:
  52   30  0.71
  53    1  0.02
  54   11  0.26

ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44


Consensus pattern (52 bp):   
TTTTTAATTTAAAAATTGAATCTTTTGTTCATAACATGTAAAAAGTAAAATC
Done.