Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007075.1 Corchorus capsularis cultivar CVL-1 contig07096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34734

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10303--10382
37
2.1
37
81
6
90
41
10
15
33
1.80
11538--12219
35
18.9
36
85
6
646
30
14
18
36
1.91
11556--12219
70
9.2
70
82
9
721
30
14
18
36
1.91
12039--12241
45
4.7
45
82
13
275
28
17
18
35
1.93
11978--12261
80
3.5
80
75
9
308
28
16
17
36
1.93
14538--14687
12
12.5
12
73
8
117
18
22
26
32
1.97
20549--20599
2
25.5
2
87
0
75
43
5
0
50
1.26
21260--21292
17
1.9
17
93
0
57
27
6
24
42
1.78
22860--23009
58
2.6
59
94
3
259
27
22
9
41
1.84
23040--23345
35
8.8
36
85
8
413
33
19
8
38
1.82
27013--27433
71
5.9
70
80
6
434
38
26
16
18
1.92
27087--27433
145
2.4
142
84
4
439
38
25
16
19
1.92
27087--27450
71
5.1
71
84
4
437
38
25
16
19
1.92
27115--27450
36
9.4
36
73
8
256
39
24
16
19
1.92
27443--27497
8
6.9
8
82
0
65
52
3
18
25
1.61
28607--28638
17
1.9
17
93
6
57
0
21
0
78
0.76
28607--28651
19
2.6
17
86
10
56
2
22
0
75
0.91
28945--29000
25
2.2
26
81
9
71
10
21
0
67
1.20
28958--28997
6
6.5
6
85
5
53
15
17
0
67
1.23
28947--28993
12
3.9
12
81
8
51
12
23
0
63
1.28
29700--29728
2
14.5
2
100
0
58
51
0
0
48
1.00
34361--34385
7
3.6
7
100
0
50
24
0
12
64
1.27

Tables:   1

The End!