Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007079.1 Corchorus capsularis cultivar CVL-1 contig07100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39957

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
324--351
6
4.7
6
100
0
56
50
0
14
35
1.43
605--634
6
5.0
6
100
0
60
50
0
16
33
1.46
1664--1698
2
17.5
2
100
0
70
48
0
0
51
1.00
5421--5451
6
5.0
6
92
7
53
16
16
32
35
1.91
11464--11488
5
5.0
5
100
0
50
60
0
40
0
0.97
11644--11674
3
10.3
3
100
0
62
0
32
0
67
0.91
18323--18349
7
3.9
7
100
0
54
14
14
55
14
1.70
23103--23127
7
3.6
7
100
0
50
28
32
24
16
1.96
25458--25484
4
6.8
4
100
0
54
25
48
0
25
1.52
27664--27722
19
3.0
19
73
9
64
38
6
18
35
1.78
30004--30035
11
2.8
12
86
13
50
0
12
0
87
0.54
30009--30035
14
1.9
14
100
0
54
0
7
0
92
0.38
34819--34843
6
4.2
6
100
0
50
36
16
16
32
1.90
35846--35903
28
2.0
29
86
3
82
27
17
13
41
1.87
39907--39936
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!