Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007081.1 Corchorus capsularis cultivar CVL-1 contig07102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44252

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16--52
12
3.2
12
82
17
51
29
0
2
67
1.04
4461--4523
30
2.0
33
87
9
96
28
20
4
46
1.71
5413--5505
37
2.6
37
79
6
111
15
18
11
54
1.70
11736--11773
20
1.9
20
94
0
67
34
21
0
44
1.52
15538--15582
20
2.1
20
84
12
54
31
35
4
28
1.77
29149--29179
14
2.2
14
100
0
62
22
12
22
41
1.88
29173--29197
12
2.1
12
100
0
50
16
16
16
52
1.76
33114--33196
32
2.6
32
83
9
116
9
15
39
34
1.80
33107--33196
16
5.7
16
72
6
67
10
15
38
35
1.81
33170--33227
23
2.6
23
83
8
66
8
17
43
31
1.79
33646--33717
31
2.3
31
77
13
85
61
9
4
25
1.45
34762--34793
15
2.1
15
100
0
64
31
18
18
31
1.95
36756--36793
18
2.1
19
90
5
60
47
18
10
23
1.79
41258--41295
18
2.1
19
85
14
53
44
21
10
23
1.83
42930--42981
21
2.5
21
81
9
63
42
0
3
53
1.19
43098--43154
16
3.4
16
80
4
60
47
1
1
49
1.22
43235--43292
29
2.0
29
83
3
73
29
17
10
43
1.82

Tables:   1

The End!