genome.fa.s7082.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007082.1 Corchorus capsularis cultivar CVL-1 contig07103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18275

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234--300	28	2.4	28	90	7	100	13	16	19	50	1.77
251--313	28	2.2	28	86	5	83	15	20	20	42	1.89
1241--1528	88	3.2	87	77	8	260	32	24	17	26	1.97
1537--1835	35	8.5	35	83	5	377	33	23	16	27	1.95
1802--1989	44	4.3	44	94	0	308	29	28	16	26	1.97
1802--1989	87	2.2	87	91	1	306	29	28	16	26	1.97
2027--2142	54	2.1	54	82	4	135	31	19	17	31	1.95
2222--2346	54	2.3	55	88	1	180	32	24	16	25	1.96
2310--2383	37	2.0	37	91	0	121	22	27	14	35	1.94
3629--3671	15	3.0	14	80	16	52	0	20	0	79	0.74
3625--3664	12	3.5	11	84	15	55	0	20	0	80	0.72
3734--3781	21	2.2	23	85	7	64	29	10	8	52	1.65
3732--3782	23	2.3	23	80	12	61	27	11	7	52	1.65
4391--4437	13	3.6	14	77	13	55	38	10	10	40	1.75
7624--8174	35	16.3	34	78	12	514	31	20	9	38	1.84
7624--8152	66	7.9	65	82	6	596	31	20	9	38	1.84
7931--7985	14	3.7	15	70	15	51	32	21	9	36	1.85
8071--8270	16	11.5	17	68	17	99	35	16	10	38	1.83
8116--8225	51	2.2	51	88	0	157	36	17	9	37	1.81
8085--8259	86	2.0	86	88	2	262	35	16	10	38	1.82
8170--8306	35	4.0	35	86	1	188	36	13	8	41	1.74
8052--8270	121	1.8	121	87	2	332	34	16	10	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9625--9666	19	2.3	19	91	4	68	9	45	4	40	1.58
11231--11273	19	2.3	19	84	8	61	55	18	18	6	1.64
11935--11982	13	3.9	12	84	10	62	0	18	0	81	0.70
11935--11983	24	2.2	24	89	10	77	0	18	0	81	0.69
11937--11989	11	4.9	10	78	21	54	0	18	1	79	0.83
12567--12619	14	3.9	13	76	9	52	33	16	5	43	1.72
12568--12619	27	1.9	27	88	7	79	32	17	5	44	1.72
15333--15466	69	2.0	68	82	5	166	35	14	8	41	1.77
15392--15445	21	2.6	21	87	0	81	38	14	0	46	1.45
15398--15530	56	2.4	56	85	2	178	38	15	6	39	1.72
15460--15500	21	2.0	21	85	0	55	39	14	4	41	1.67
15482--15573	43	2.1	43	87	0	130	38	17	7	36	1.78
15586--15826	43	5.3	43	83	12	313	35	19	7	37	1.79
15426--15673	100	2.5	98	89	3	361	37	17	7	37	1.78
15495--15826	142	2.3	143	95	1	587	36	18	6	37	1.78
15629--15815	99	1.9	99	95	0	338	35	19	7	36	1.80
18140--18233	27	3.4	27	92	4	152	12	15	22	48	1.79
18140--18246	55	1.9	57	86	7	157	13	17	22	46	1.82

Tables:   1

The End!