Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007085.1 Corchorus capsularis cultivar CVL-1 contig07106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26070

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1281--1307
12
2.2
12
100
0
54
85
0
14
0
0.61
8324--8359
11
3.2
11
84
7
54
47
0
16
36
1.47
8325--8361
12
3.2
12
88
3
58
45
0
16
37
1.47
9052--9342
124
2.3
125
82
2
343
24
25
23
26
2.00
10301--10569
147
1.8
147
86
1
396
24
26
25
24
2.00
10653--11117
92
5.1
92
87
2
664
32
18
25
23
1.97
10653--11101
184
2.4
184
93
0
765
32
18
25
22
1.97
15301--15365
30
2.1
31
91
2
105
26
20
4
49
1.68
15307--15372
30
2.1
31
88
5
98
30
16
4
48
1.66
15375--15427
19
2.8
19
77
5
54
35
5
1
56
1.34
15455--15561
22
4.9
22
84
6
74
34
12
17
35
1.87
15478--15561
44
1.9
44
95
0
150
35
13
15
35
1.86
15478--15593
44
2.6
44
81
13
139
34
11
16
37
1.84
15679--16041
22
16.3
22
68
19
125
40
9
14
35
1.79
15869--15907
21
2.0
19
85
14
53
46
5
7
41
1.55
15828--16041
44
4.8
44
75
9
168
41
9
13
35
1.77
15893--16041
66
2.3
66
80
2
165
41
10
13
34
1.78
15900--16066
88
1.9
88
83
4
221
42
10
12
34
1.78
16149--16216
19
3.5
20
82
10
70
44
11
19
25
1.84
16160--16213
19
2.8
19
94
0
90
42
11
24
22
1.85
16204--16368
22
7.5
22
73
8
120
41
10
13
35
1.78
16198--16343
66
2.2
66
79
9
163
40
9
15
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16204--16368
44
3.8
43
76
13
133
41
10
13
35
1.78
16441--16633
22
8.7
22
68
16
87
35
10
14
39
1.80
16550--16677
22
5.8
22
72
9
71
35
11
15
37
1.84
16711--16763
21
2.5
21
84
3
61
41
15
9
33
1.79
16884--16914
2
15.5
2
100
0
62
48
0
0
51
1.00
17782--17808
2
13.5
2
100
0
54
51
0
0
48
1.00
18989--19091
33
3.1
33
82
0
116
16
33
39
10
1.83
19562--19588
13
2.1
13
100
0
54
29
7
44
18
1.77

Tables:   1

The End!