Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007087.1 Corchorus capsularis cultivar CVL-1 contig07108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2833
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:1264 original size:33 final size:33

Alignment explanation


    Indices: 1188--1311  Score: 135
    Period size: 33  Copynumber: 3.7  Consensus size: 33

       1178 TAGACAAAGG

                                   *    *     
       1188 GTCGCGTGGCCGGTTGTGGCCGGGCATGGCCGA-
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCC-AT

                **           *     *         
       1221 GTCGTTTGGCCGGTTGTAGCCGGCCATGTCCAT
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT

                                              
       1254 GTCGCGTGGCCGG-TGATGGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTG-TGGCCGGACATGTCCAT

                      *              
       1287 GTCGCGTGGCTGGTCTTGTGGCCGG
          1 GTCGCGTGGCCGG--TTGTGGCCGG

       1312 TGTTGCGCGG


Statistics
Matches: 76,  Mismatches: 10, Indels: 8
        0.81            0.11        0.09

Matches are distributed among these distances:
  32    3  0.04
  33   64  0.84
  35    7  0.09
  36    2  0.03

ACGTcount: A:0.07, C:0.27, G:0.42, T:0.24


Consensus pattern (33 bp):   
GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT
Done.