genome.fa.s7088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007088.1 Corchorus capsularis cultivar CVL-1 contig07109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119806

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2275--2344	29	2.4	29	85	2	86	38	28	12	20	1.89
7356--7557	31	6.6	31	90	0	291	31	14	19	34	1.92
7356--7599	31	7.9	31	85	4	151	29	13	20	35	1.92
7573--7666	39	2.4	39	96	0	170	30	12	21	35	1.91
10745--10808	32	2.0	32	87	6	94	12	35	42	9	1.75
11826--11851	13	2.0	13	100	0	52	46	0	0	53	1.00
13120--13171	27	1.9	27	84	0	68	32	34	1	30	1.69
14198--14290	49	1.9	48	95	4	170	24	12	22	39	1.89
17292--17325	11	3.2	10	84	15	50	50	17	2	29	1.61
18207--18234	14	2.0	14	100	0	56	35	14	7	42	1.73
19456--19488	11	3.0	11	95	0	57	3	24	54	18	1.57
22830--23085	71	3.5	72	86	8	372	48	5	16	29	1.70
22874--22985	37	3.1	37	69	21	119	47	6	16	30	1.71
22840--22956	34	3.4	34	72	19	114	49	6	14	29	1.69
22989--23085	39	2.6	36	73	17	92	46	6	16	30	1.71
23134--23278	16	9.1	16	65	15	77	53	6	22	17	1.65
23405--23431	14	1.9	14	100	0	54	51	7	18	22	1.70
23413--23531	34	3.4	35	80	8	129	57	2	20	20	1.53
23483--23520	20	1.9	20	88	0	58	63	2	15	18	1.43
23506--23570	29	2.3	28	83	2	85	56	1	23	18	1.49
23507--23582	29	2.6	28	80	12	82	57	1	21	19	1.47
27522--27561	15	2.9	15	78	14	50	72	10	0	17	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28925--28958	11	3.2	10	84	15	50	50	17	2	29	1.61
29889--29913	13	1.9	13	100	0	50	16	28	8	48	1.74
32213--32237	13	1.9	13	100	0	50	48	4	0	48	1.20
34924--35124	110	1.8	110	82	4	262	41	17	12	27	1.87
41509--41538	14	2.1	15	93	6	53	30	16	13	40	1.87
42875--42901	14	1.9	14	100	0	54	22	11	29	37	1.89
42887--44835	983	2.0	983	94	0	3461	29	14	22	33	1.94
47839--47868	2	15.0	2	92	0	51	50	3	0	46	1.18
49621--49686	22	3.0	21	73	4	60	30	15	24	30	1.95
51467--51496	2	15.5	2	93	6	53	53	0	0	46	1.00
57932--59160	310	4.0	310	99	0	2404	37	23	14	24	1.93
57932--59160	622	2.0	620	99	0	2404	37	23	14	24	1.93
59336--59377	18	2.3	18	95	0	75	42	19	4	33	1.72
59844--59898	23	2.4	22	76	11	58	80	0	9	10	0.92
59927--59982	15	3.5	15	75	22	51	1	32	0	66	1.03
62371--62401	1	31.0	1	100	0	62	100	0	0	0	0.00
62437--62475	6	6.5	6	96	0	69	20	0	66	12	1.24
62712--62753	21	2.0	21	90	9	68	76	0	23	0	0.79
62712--62752	20	2.0	21	86	13	59	75	0	24	0	0.80
64798--64830	6	5.8	6	89	10	52	0	12	0	87	0.53
64799--64833	11	3.4	11	92	7	56	0	11	0	88	0.51
65169--65200	15	2.1	15	94	0	55	21	15	6	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65298--65330	10	3.2	10	91	8	57	87	0	0	12	0.53
67753--67896	72	2.0	72	94	0	252	13	13	19	53	1.72
71676--72061	49	7.9	49	82	6	412	32	15	28	23	1.95
73929--74024	28	3.2	28	70	18	86	32	20	26	20	1.98
73926--74072	61	2.4	61	88	4	208	33	17	27	22	1.96
73947--74045	33	3.2	32	69	19	91	33	17	25	24	1.96
74096--74328	62	3.8	62	81	7	280	32	16	27	24	1.96
74247--74336	27	3.1	27	64	22	65	31	12	26	30	1.92
74238--74338	33	3.2	32	65	22	79	33	11	24	29	1.91
74417--74752	33	11.1	33	63	24	150	32	14	27	24	1.95
74354--74776	60	7.0	60	87	2	571	32	14	27	24	1.95
74365--74786	121	3.5	119	85	6	553	32	14	27	24	1.95
74814--74906	47	2.0	46	83	12	118	37	18	22	21	1.94
74891--75439	48	11.5	48	89	0	757	33	17	29	19	1.95
75497--75674	68	2.6	67	80	6	212	30	19	26	23	1.98
76813--76852	10	3.9	10	83	3	53	2	10	2	85	0.80
80246--80650	49	8.2	49	81	4	388	32	15	27	23	1.95
80282--80649	146	2.5	144	82	5	434	31	16	27	24	1.96
81228--81305	29	2.7	28	77	15	86	39	29	14	16	1.88
87608--87644	19	1.9	20	88	5	58	56	2	24	16	1.53
87781--87866	36	2.4	36	86	3	111	44	9	17	29	1.80
87860--88307	22	21.0	22	75	10	304	47	9	18	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87894--88307	11	38.5	11	71	12	218	48	9	18	23	1.78
87894--88299	33	12.6	33	78	7	332	48	9	18	23	1.78
87916--88249	116	2.9	116	82	8	360	48	9	18	23	1.77
88299--88618	36	9.0	36	90	3	477	42	10	22	23	1.85
88301--88643	177	1.9	177	94	3	602	42	10	22	23	1.85
88642--88775	36	3.9	34	76	18	129	50	5	16	27	1.68
88642--88775	68	2.0	68	91	2	216	50	5	16	27	1.68
92474--92517	22	2.0	22	87	12	65	31	9	6	52	1.59
96352--96474	52	2.4	52	83	0	156	32	18	13	35	1.89
101649--101694	16	2.9	16	75	18	51	73	0	23	2	0.94
103072--103142	36	2.0	36	86	5	99	39	15	19	25	1.91
103123--103347	38	5.9	38	89	2	326	35	20	16	28	1.94
103123--103348	114	2.0	114	91	0	371	34	20	15	28	1.94
103341--103478	60	2.2	62	78	3	145	28	28	12	31	1.93
103585--103664	35	2.3	35	95	0	151	23	16	22	37	1.93
104170--104213	22	2.0	22	87	12	65	31	9	6	52	1.59
108098--108220	52	2.4	51	82	5	149	32	17	13	36	1.89
109367--109437	37	1.9	38	88	5	110	11	23	7	57	1.58
111979--112042	30	2.1	31	82	2	76	18	25	20	35	1.95
113589--113647	12	4.9	12	93	0	100	6	15	40	37	1.74
114492--114536	21	2.1	21	91	0	72	17	35	11	35	1.86
114750--114847	32	3.0	32	76	7	99	19	37	31	11	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114951--115037	33	2.6	34	84	13	110	10	42	35	11	1.75
115104--115246	32	4.4	32	89	3	207	13	28	42	15	1.84
115104--115252	64	2.3	65	90	3	230	13	28	42	15	1.84
116852--116934	41	2.0	42	95	4	152	42	4	7	45	1.53
116999--117033	17	2.1	17	88	0	52	60	0	28	11	1.32
117230--117267	11	3.5	11	89	10	51	39	0	2	57	1.12

Tables:   1

The End!