Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007089.1 Corchorus capsularis cultivar CVL-1 contig07110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38692

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
603--668
21
3.3
21
72
20
77
6
22
19
51
1.69
1425--1541
27
4.3
27
88
0
180
21
41
17
19
1.90
3469--3513
12
3.8
12
81
0
54
15
13
53
17
1.73
3469--3509
18
2.3
18
91
0
64
14
14
53
17
1.73
3682--3709
2
14.0
2
100
0
56
50
0
0
50
1.00
3875--3937
32
2.0
32
87
6
92
36
26
17
19
1.94
3986--4054
24
2.9
24
93
0
111
24
31
31
11
1.91
4402--5264
422
2.0
427
82
6
1045
30
15
12
41
1.85
12142--12306
22
7.5
22
76
9
133
35
14
10
40
1.80
13080--13114
2
17.5
2
93
0
61
48
0
2
48
1.16
13452--13550
29
3.3
29
69
15
94
34
15
20
30
1.93
13425--13581
60
2.6
60
94
2
271
34
16
21
28
1.95
13481--13582
31
3.4
31
71
15
113
37
17
19
25
1.94
13481--13894
213
1.9
213
90
0
650
33
18
19
28
1.95
13836--13939
31
3.4
31
72
15
108
25
18
19
37
1.94
13835--14123
60
4.8
60
78
11
259
27
19
17
35
1.94
13838--14131
124
2.4
124
82
6
343
28
19
17
35
1.94
24758--24843
42
2.0
42
90
0
136
19
13
18
47
1.82
26941--27003
28
2.2
28
97
0
117
14
36
0
49
1.44
27446--27558
31
3.7
31
78
1
111
18
21
24
35
1.96
27537--27601
22
3.0
22
84
2
87
18
16
24
40
1.91
30704--30745
13
3.3
13
76
6
50
57
9
2
30
1.44

Tables:   1

The End!