Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007096.1 Corchorus capsularis cultivar CVL-1 contig07117, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58137

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9089--9131
22
2.0
22
95
0
77
39
30
9
20
1.84
10545--10591
21
2.2
22
96
3
87
14
21
46
17
1.83
10553--10598
21
2.2
21
92
0
74
19
19
41
19
1.91
11786--11823
11
3.5
11
89
10
51
39
0
2
57
1.12
13071--13121
23
2.2
23
79
6
59
45
0
7
47
1.32
13845--14011
78
2.2
78
94
2
293
49
0
14
35
1.43
13927--14077
65
2.2
68
85
10
195
51
0
11
36
1.39
15396--15445
24
2.1
24
100
0
100
70
14
4
12
1.31
16056--16111
29
2.0
28
93
6
96
33
10
17
37
1.85
17474--17525
26
2.0
26
84
0
68
44
7
9
38
1.66
21188--21227
1
40.0
1
100
0
80
100
0
0
0
0.00
25616--25734
16
7.6
16
89
6
190
5
12
39
42
1.65
25616--25734
47
2.5
48
88
8
190
5
12
39
42
1.65
26606--26635
10
2.9
10
95
5
51
0
16
60
23
1.36
43307--43390
39
2.2
39
100
0
168
29
19
22
28
1.98
51226--51258
11
3.0
11
90
0
57
45
9
6
39
1.61
51403--51467
31
2.1
31
91
0
103
23
13
20
43
1.87
53272--53660
199
2.0
199
94
0
679
34
13
16
35
1.88

Tables:   1

The End!