Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007099.1 Corchorus capsularis cultivar CVL-1 contig07120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39154

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
264--290
10
2.7
10
100
0
54
62
0
0
37
0.95
2510--2566
29
2.0
29
96
0
105
47
10
12
29
1.74
4909--4954
24
2.0
24
82
4
58
67
21
8
2
1.29
8856--9009
60
2.6
60
87
2
211
27
21
11
38
1.88
11301--11333
3
11.0
3
100
0
66
33
0
0
66
0.92
12083--12214
31
4.5
31
75
16
138
15
22
28
33
1.95
12103--12205
53
1.9
53
90
0
161
16
19
27
36
1.93
12848--12880
2
16.5
2
93
0
57
51
0
0
48
1.00
17533--17579
24
2.0
24
95
0
85
44
10
0
44
1.38
18332--18361
3
10.0
3
100
0
60
33
33
0
33
1.58
21713--22282
285
2.0
285
92
2
939
39
11
11
37
1.78
24129--24174
21
2.2
21
78
21
53
71
2
21
4
1.14
24779--24825
2
23.5
2
95
0
85
0
2
48
48
1.13
24825--24854
2
15.0
2
100
0
60
50
0
0
50
1.00
26160--26267
52
2.1
50
85
13
141
58
10
0
31
1.31
28233--28281
16
3.1
16
80
8
57
32
2
2
63
1.17
34646--34758
33
3.4
33
81
6
131
8
26
40
23
1.84

Tables:   1

The End!