Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000710.1 Corchorus capsularis cultivar CVL-1 contig00710, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1846
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25


Found at i:242 original size:15 final size:15

Alignment explanation


    Indices: 222--255  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        212 AAAGCAACTT

                            
        222 ATAAAACAAGTTA-TA
          1 ATAAAACAA-TTAGTA

                           
        237 ATAAAACAATTAGTA
          1 ATAAAACAATTAGTA

                
        252 ATAA
          1 ATAA

        256 TAAATCCAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    3  0.17
  15   15  0.83

ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26


Consensus pattern (15 bp):   
ATAAAACAATTAGTA
Done.