Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007100.1 Corchorus capsularis cultivar CVL-1 contig07121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41081

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1407--1436
13
2.3
13
100
0
60
60
20
10
10
1.57
1549--1583
17
2.1
17
100
0
70
42
17
17
22
1.88
1984--2033
25
2.0
25
100
0
100
44
32
12
12
1.78
7612--7643
11
2.9
11
95
0
55
40
0
18
40
1.51
7626--7664
18
2.1
18
85
4
51
43
5
20
30
1.73
9008--9051
21
2.2
20
83
4
52
22
6
6
63
1.43
9014--9061
20
2.3
21
89
3
71
20
8
4
66
1.35
9253--9655
166
2.4
165
87
2
558
38
17
15
28
1.91
9968--10053
45
1.9
45
92
0
145
26
20
17
34
1.95
19667--19700
14
2.3
15
90
5
52
32
14
0
52
1.42
24115--24151
19
2.0
18
89
5
56
29
21
8
40
1.82
25375--25404
12
2.6
12
94
5
53
43
33
0
23
1.54
34672--34841
30
5.6
30
94
0
295
34
18
17
30
1.94
35709--35785
38
2.0
38
94
0
136
36
16
11
35
1.86
36860--36888
2
14.5
2
100
0
58
48
0
0
51
1.00
37632--37677
23
2.0
23
91
8
76
36
0
0
63
0.95

Tables:   1

The End!