genome.fa.s7101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007101.1 Corchorus capsularis cultivar CVL-1 contig07122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73396

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2551--2634	27	2.9	28	82	12	100	50	13	7	29	1.68
9605--9671	34	2.0	34	84	0	89	25	5	34	34	1.80
9831--9903	14	5.6	14	68	23	61	27	0	23	49	1.50
9823--9909	27	3.4	27	74	18	103	27	1	21	49	1.57
10202--10226	12	2.1	12	100	0	50	32	12	32	24	1.91
19537--19770	35	6.7	35	86	4	292	38	9	19	32	1.85
19536--19770	70	3.3	70	84	5	330	37	10	19	32	1.85
19572--19770	105	1.9	106	92	1	337	38	9	19	32	1.84
19750--19890	55	2.5	56	80	10	137	41	7	21	29	1.81
24504--24538	18	2.0	18	88	5	54	77	0	22	0	0.78
25679--25773	35	2.7	35	80	1	111	22	21	17	38	1.93
25853--26165	71	4.4	71	78	10	289	18	14	30	36	1.91
25855--26203	180	1.9	180	81	3	416	18	14	30	36	1.90
25837--26192	36	9.9	36	72	10	253	18	14	30	36	1.91
29969--30138	35	4.9	35	85	8	229	38	9	19	32	1.84
30074--30133	19	3.3	19	68	13	63	36	11	20	31	1.88
31036--31099	25	2.6	25	87	0	92	25	31	25	18	1.98
33391--33446	27	2.1	27	89	0	85	32	41	8	17	1.81
38327--38366	7	5.6	7	88	5	62	40	0	2	57	1.12
40035--40074	21	1.9	19	85	14	53	65	5	2	27	1.27
42164--42205	17	2.5	17	88	7	59	23	50	23	2	1.61
42196--42252	16	3.6	16	88	4	89	35	42	17	5	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43854--43879	2	13.0	2	100	0	52	50	0	0	50	1.00
47975--48245	49	5.5	48	83	3	272	25	29	15	29	1.96
47975--48296	98	3.3	98	78	4	310	25	28	15	29	1.96
48006--48281	147	1.9	147	82	6	353	23	28	14	33	1.94
48718--48834	58	2.0	58	93	0	198	21	23	27	28	1.99
48878--48943	27	2.4	28	92	2	107	25	0	21	53	1.46
57577--57624	19	2.3	21	86	10	64	41	25	14	18	1.88
57544--57644	53	1.9	53	91	0	166	38	27	17	15	1.91
62533--62564	12	2.7	12	100	0	64	65	34	0	0	0.93
62906--62932	13	2.1	13	100	0	54	92	7	0	0	0.38

Tables:   1

The End!