Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007106.1 Corchorus capsularis cultivar CVL-1 contig07127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26755

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--72
2
36.0
2
100
0
144
0
50
0
50
1.00
269--379
56
2.0
56
82
3
134
35
12
24
27
1.92
381--430
18
2.9
18
82
5
59
28
28
12
32
1.92
1644--1673
2
15.0
2
100
0
60
50
0
0
50
1.00
2208--2282
36
2.1
36
97
0
141
21
29
10
38
1.87
3620--3656
2
18.5
2
100
0
74
48
0
0
51
1.00
6323--6377
19
2.9
19
94
0
92
27
30
12
29
1.93
6637--7603
437
2.2
437
87
2
1386
42
17
13
26
1.87
8914--9052
46
3.0
46
87
0
188
31
16
20
30
1.95
9197--9351
36
4.3
36
90
1
213
25
21
25
28
1.99
9647--9788
45
3.2
46
83
9
186
30
20
23
25
1.99
9827--9860
17
2.0
17
100
0
68
41
17
17
23
1.90
9847--9931
37
2.3
37
85
4
109
34
18
25
21
1.96
10727--10954
40
5.7
41
83
6
279
25
17
19
36
1.94
10727--10954
77
2.9
77
83
5
269
25
17
19
36
1.94
11004--11239
114
2.1
112
88
5
352
32
21
22
23
1.98
11648--11683
18
2.0
18
100
0
72
16
33
22
27
1.95
16124--16188
32
2.0
32
93
0
112
29
20
13
36
1.91
16269--16334
29
2.2
31
81
5
73
33
7
19
39
1.80
19918--19974
22
2.6
22
85
0
78
38
12
14
35
1.83
19891--19983
22
4.2
22
70
15
75
37
10
13
37
1.80
20159--20201
6
7.2
6
100
0
86
67
16
0
16
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22861--22958
22
4.5
22
78
7
92
40
14
12
32
1.83
22865--22958
44
2.1
44
86
0
125
39
14
12
32
1.85
22925--22977
22
2.4
22
90
0
79
47
16
7
28
1.74
22919--23030
44
2.5
43
77
9
118
45
11
12
30
1.77
22875--23024
66
2.3
66
78
11
148
44
13
10
31
1.78
23051--23125
22
3.4
21
82
10
89
38
6
20
34
1.78

Tables:   1

The End!